Strain Fitness in Variovorax sp. SCN45 around GFF1224

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1223 and GFF1224 are separated by 15 nucleotidesGFF1224 and GFF1225 are separated by 149 nucleotides GFF1223 - Aldo/keto reductase, SMc04056 family, at 542,647 to 543,675 GFF1223 GFF1224 - Transcriptional regulator, LysR family, at 543,691 to 544,584 GFF1224 GFF1225 - Glycine/D-amino acid oxidases (deaminating), at 544,734 to 545,906 GFF1225 Position (kb) 543 544 545Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 542.828 kb on + strand, within GFF1223at 542.830 kb on + strand, within GFF1223at 542.831 kb on - strand, within GFF1223at 542.831 kb on - strand, within GFF1223at 542.831 kb on - strand, within GFF1223at 542.831 kb on - strand, within GFF1223at 543.010 kb on + strand, within GFF1223at 543.010 kb on + strand, within GFF1223at 543.011 kb on - strand, within GFF1223at 543.011 kb on - strand, within GFF1223at 543.011 kb on - strand, within GFF1223at 543.109 kb on + strand, within GFF1223at 543.109 kb on + strand, within GFF1223at 543.109 kb on + strand, within GFF1223at 543.110 kb on - strand, within GFF1223at 543.110 kb on - strand, within GFF1223at 543.188 kb on - strand, within GFF1223at 543.188 kb on - strand, within GFF1223at 543.188 kb on - strand, within GFF1223at 543.188 kb on - strand, within GFF1223at 543.205 kb on + strand, within GFF1223at 543.205 kb on + strand, within GFF1223at 543.205 kb on + strand, within GFF1223at 543.206 kb on - strand, within GFF1223at 543.208 kb on + strand, within GFF1223at 543.208 kb on + strand, within GFF1223at 543.208 kb on + strand, within GFF1223at 543.208 kb on + strand, within GFF1223at 543.208 kb on + strand, within GFF1223at 543.208 kb on + strand, within GFF1223at 543.209 kb on - strand, within GFF1223at 543.209 kb on - strand, within GFF1223at 543.229 kb on + strand, within GFF1223at 543.230 kb on - strand, within GFF1223at 543.623 kb on - strandat 543.628 kb on + strandat 543.773 kb on + strandat 543.773 kb on + strandat 543.773 kb on + strandat 543.773 kb on + strandat 543.774 kb on - strandat 543.774 kb on - strandat 543.774 kb on - strandat 543.774 kb on - strandat 543.774 kb on - strandat 543.776 kb on + strandat 543.776 kb on + strandat 543.777 kb on - strandat 543.777 kb on - strandat 543.777 kb on - strandat 543.777 kb on - strandat 543.917 kb on + strand, within GFF1224at 543.947 kb on + strand, within GFF1224at 543.947 kb on + strand, within GFF1224at 543.947 kb on + strand, within GFF1224at 543.947 kb on + strand, within GFF1224at 543.948 kb on - strand, within GFF1224at 543.948 kb on - strand, within GFF1224at 543.968 kb on + strand, within GFF1224at 543.968 kb on + strand, within GFF1224at 543.968 kb on + strand, within GFF1224at 543.968 kb on + strand, within GFF1224at 543.968 kb on + strand, within GFF1224at 543.968 kb on + strand, within GFF1224at 543.969 kb on - strand, within GFF1224at 543.969 kb on - strand, within GFF1224at 544.081 kb on + strand, within GFF1224at 544.145 kb on + strand, within GFF1224at 544.145 kb on + strand, within GFF1224at 544.161 kb on - strand, within GFF1224at 544.253 kb on - strand, within GFF1224at 544.380 kb on - strand, within GFF1224at 544.380 kb on - strand, within GFF1224at 544.655 kb on - strandat 544.686 kb on + strandat 544.785 kb on + strandat 544.785 kb on + strandat 544.785 kb on + strandat 544.932 kb on + strand, within GFF1225at 545.022 kb on + strand, within GFF1225at 545.022 kb on + strand, within GFF1225at 545.022 kb on + strand, within GFF1225at 545.022 kb on + strand, within GFF1225at 545.022 kb on + strand, within GFF1225at 545.023 kb on - strand, within GFF1225at 545.023 kb on - strand, within GFF1225at 545.193 kb on + strand, within GFF1225at 545.193 kb on + strand, within GFF1225at 545.193 kb on + strand, within GFF1225at 545.202 kb on + strand, within GFF1225at 545.202 kb on + strand, within GFF1225at 545.202 kb on + strand, within GFF1225at 545.202 kb on + strand, within GFF1225at 545.203 kb on - strand, within GFF1225at 545.203 kb on - strand, within GFF1225at 545.253 kb on + strand, within GFF1225at 545.253 kb on + strand, within GFF1225at 545.253 kb on + strand, within GFF1225at 545.254 kb on - strand, within GFF1225at 545.431 kb on + strand, within GFF1225at 545.431 kb on + strand, within GFF1225at 545.432 kb on - strand, within GFF1225at 545.432 kb on - strand, within GFF1225at 545.432 kb on - strand, within GFF1225at 545.583 kb on + strand, within GFF1225at 545.583 kb on + strand, within GFF1225at 545.583 kb on + strand, within GFF1225

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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542,828 + GFF1223 0.18 -1.4
542,830 + GFF1223 0.18 +2.4
542,831 - GFF1223 0.18 +0.9
542,831 - GFF1223 0.18 -0.9
542,831 - GFF1223 0.18 +1.2
542,831 - GFF1223 0.18 +1.9
543,010 + GFF1223 0.35 +3.1
543,010 + GFF1223 0.35 -0.3
543,011 - GFF1223 0.35 -0.9
543,011 - GFF1223 0.35 -2.0
543,011 - GFF1223 0.35 -1.9
543,109 + GFF1223 0.45 +0.7
543,109 + GFF1223 0.45 -1.3
543,109 + GFF1223 0.45 -3.0
543,110 - GFF1223 0.45 -0.7
543,110 - GFF1223 0.45 +0.2
543,188 - GFF1223 0.53 -0.4
543,188 - GFF1223 0.53 -1.4
543,188 - GFF1223 0.53 +0.9
543,188 - GFF1223 0.53 +0.9
543,205 + GFF1223 0.54 -2.3
543,205 + GFF1223 0.54 -2.3
543,205 + GFF1223 0.54 +2.2
543,206 - GFF1223 0.54 +1.9
543,208 + GFF1223 0.55 +0.0
543,208 + GFF1223 0.55 +1.9
543,208 + GFF1223 0.55 -1.3
543,208 + GFF1223 0.55 -2.7
543,208 + GFF1223 0.55 +0.3
543,208 + GFF1223 0.55 -2.2
543,209 - GFF1223 0.55 +0.4
543,209 - GFF1223 0.55 -0.7
543,229 + GFF1223 0.57 +1.7
543,230 - GFF1223 0.57 +0.0
543,623 - +0.3
543,628 + +2.7
543,773 + -0.1
543,773 + +2.4
543,773 + -1.9
543,773 + -0.4
543,774 - -4.0
543,774 - -1.1
543,774 - +1.7
543,774 - -0.1
543,774 - +0.2
543,776 + +0.3
543,776 + -0.7
543,777 - -2.1
543,777 - -1.9
543,777 - -2.7
543,777 - -1.1
543,917 + GFF1224 0.25 +0.3
543,947 + GFF1224 0.29 +0.8
543,947 + GFF1224 0.29 +2.5
543,947 + GFF1224 0.29 -3.1
543,947 + GFF1224 0.29 +0.9
543,948 - GFF1224 0.29 -1.6
543,948 - GFF1224 0.29 +1.0
543,968 + GFF1224 0.31 -0.5
543,968 + GFF1224 0.31 +1.5
543,968 + GFF1224 0.31 -0.2
543,968 + GFF1224 0.31 +0.2
543,968 + GFF1224 0.31 +0.9
543,968 + GFF1224 0.31 +0.2
543,969 - GFF1224 0.31 +0.5
543,969 - GFF1224 0.31 +1.3
544,081 + GFF1224 0.44 -1.7
544,145 + GFF1224 0.51 -3.4
544,145 + GFF1224 0.51 -2.6
544,161 - GFF1224 0.53 +0.9
544,253 - GFF1224 0.63 +0.3
544,380 - GFF1224 0.77 +1.8
544,380 - GFF1224 0.77 -0.7
544,655 - -0.6
544,686 + +1.9
544,785 + -1.1
544,785 + -2.7
544,785 + -2.1
544,932 + GFF1225 0.17 -1.3
545,022 + GFF1225 0.25 -1.8
545,022 + GFF1225 0.25 +1.8
545,022 + GFF1225 0.25 -2.2
545,022 + GFF1225 0.25 -0.6
545,022 + GFF1225 0.25 -0.7
545,023 - GFF1225 0.25 +1.0
545,023 - GFF1225 0.25 +0.3
545,193 + GFF1225 0.39 -0.9
545,193 + GFF1225 0.39 -1.1
545,193 + GFF1225 0.39 -0.8
545,202 + GFF1225 0.40 -0.1
545,202 + GFF1225 0.40 -1.2
545,202 + GFF1225 0.40 -0.3
545,202 + GFF1225 0.40 +2.2
545,203 - GFF1225 0.40 -1.6
545,203 - GFF1225 0.40 -1.7
545,253 + GFF1225 0.44 -2.1
545,253 + GFF1225 0.44 -2.4
545,253 + GFF1225 0.44 -1.9
545,254 - GFF1225 0.44 -1.1
545,431 + GFF1225 0.59 -0.4
545,431 + GFF1225 0.59 -0.2
545,432 - GFF1225 0.60 +1.0
545,432 - GFF1225 0.60 +0.4
545,432 - GFF1225 0.60 -1.6
545,583 + GFF1225 0.72 +0.7
545,583 + GFF1225 0.72 +0.1
545,583 + GFF1225 0.72 +1.2

Or see this region's nucleotide sequence