Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1209 and GFF1210 are separated by 15 nucleotides GFF1210 and GFF1211 are separated by 23 nucleotides GFF1211 and GFF1212 are separated by 19 nucleotides GFF1212 and GFF1213 are separated by 10 nucleotides
GFF1209 - hypothetical protein, at 526,818 to 528,755
GFF1209
GFF1210 - D-aminopeptidase dipeptide-binding protein DppA (EC 3.4.11.-), at 528,771 to 529,589
GFF1210
GFF1211 - D-aminopeptidase (EC 3.4.11.19), at 529,613 to 530,695
GFF1211
GFF1212 - Oligopeptide transport permease protein OppC-like @ Glutathione ABC transporter, permease protein GsiD, at 530,715 to 531,641
GFF1212
GFF1213 - Oligopeptide transport permease protein OppB-like @ Glutathione ABC transporter, permease protein GsiC, at 531,652 to 532,572
GFF1213
Position (kb) 529
530
531 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 528.657 kb on + strand at 528.657 kb on + strand at 528.658 kb on - strand at 529.177 kb on + strand, within GFF1210 at 529.178 kb on - strand, within GFF1210 at 529.282 kb on + strand, within GFF1210 at 529.283 kb on - strand, within GFF1210 at 529.508 kb on - strand at 529.508 kb on - strand at 529.543 kb on + strand at 529.543 kb on + strand at 529.544 kb on - strand at 529.544 kb on - strand at 529.544 kb on - strand at 529.544 kb on - strand at 529.544 kb on - strand at 529.822 kb on - strand, within GFF1211 at 529.822 kb on - strand, within GFF1211 at 529.822 kb on - strand, within GFF1211 at 529.822 kb on - strand, within GFF1211 at 529.866 kb on + strand, within GFF1211 at 529.867 kb on - strand, within GFF1211 at 530.076 kb on + strand, within GFF1211 at 530.076 kb on + strand, within GFF1211 at 530.076 kb on + strand, within GFF1211 at 530.077 kb on - strand, within GFF1211 at 530.077 kb on - strand, within GFF1211 at 530.245 kb on - strand, within GFF1211 at 530.245 kb on - strand, within GFF1211 at 530.369 kb on + strand, within GFF1211 at 530.369 kb on + strand, within GFF1211 at 530.369 kb on + strand, within GFF1211 at 530.369 kb on + strand, within GFF1211 at 530.370 kb on - strand, within GFF1211 at 530.956 kb on + strand, within GFF1212 at 530.956 kb on + strand, within GFF1212 at 530.956 kb on + strand, within GFF1212 at 530.956 kb on + strand, within GFF1212 at 530.957 kb on - strand, within GFF1212 at 531.046 kb on + strand, within GFF1212 at 531.046 kb on + strand, within GFF1212 at 531.046 kb on + strand, within GFF1212 at 531.046 kb on + strand, within GFF1212 at 531.047 kb on - strand, within GFF1212 at 531.047 kb on - strand, within GFF1212 at 531.047 kb on - strand, within GFF1212 at 531.047 kb on - strand, within GFF1212 at 531.244 kb on + strand, within GFF1212 at 531.244 kb on + strand, within GFF1212 at 531.245 kb on - strand, within GFF1212 at 531.245 kb on - strand, within GFF1212 at 531.245 kb on - strand, within GFF1212 at 531.245 kb on - strand, within GFF1212 at 531.418 kb on + strand, within GFF1212 at 531.419 kb on - strand, within GFF1212 at 531.660 kb on - strand at 531.680 kb on + strand at 531.681 kb on - strand at 531.686 kb on + strand at 531.686 kb on + strand at 531.687 kb on - strand at 531.687 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 528,657 + -0.7 528,657 + -1.3 528,658 - -1.5 529,177 + GFF1210 0.50 +1.1 529,178 - GFF1210 0.50 -0.7 529,282 + GFF1210 0.62 +0.9 529,283 - GFF1210 0.63 +1.3 529,508 - +1.4 529,508 - +0.5 529,543 + +0.8 529,543 + -0.4 529,544 - -2.2 529,544 - -0.6 529,544 - +1.9 529,544 - -0.6 529,544 - -1.0 529,822 - GFF1211 0.19 -0.9 529,822 - GFF1211 0.19 -1.7 529,822 - GFF1211 0.19 +0.1 529,822 - GFF1211 0.19 -0.8 529,866 + GFF1211 0.23 -0.8 529,867 - GFF1211 0.23 -0.9 530,076 + GFF1211 0.43 -0.7 530,076 + GFF1211 0.43 -0.9 530,076 + GFF1211 0.43 -0.4 530,077 - GFF1211 0.43 +0.6 530,077 - GFF1211 0.43 +1.0 530,245 - GFF1211 0.58 -0.7 530,245 - GFF1211 0.58 -0.9 530,369 + GFF1211 0.70 -0.9 530,369 + GFF1211 0.70 -0.0 530,369 + GFF1211 0.70 +0.9 530,369 + GFF1211 0.70 -1.7 530,370 - GFF1211 0.70 +1.3 530,956 + GFF1212 0.26 -0.3 530,956 + GFF1212 0.26 -1.1 530,956 + GFF1212 0.26 +0.7 530,956 + GFF1212 0.26 -0.7 530,957 - GFF1212 0.26 +2.2 531,046 + GFF1212 0.36 -1.8 531,046 + GFF1212 0.36 -0.7 531,046 + GFF1212 0.36 +0.9 531,046 + GFF1212 0.36 -0.2 531,047 - GFF1212 0.36 -3.0 531,047 - GFF1212 0.36 +0.3 531,047 - GFF1212 0.36 -0.4 531,047 - GFF1212 0.36 -1.2 531,244 + GFF1212 0.57 +2.3 531,244 + GFF1212 0.57 +3.7 531,245 - GFF1212 0.57 -1.3 531,245 - GFF1212 0.57 +1.0 531,245 - GFF1212 0.57 -1.5 531,245 - GFF1212 0.57 -0.3 531,418 + GFF1212 0.76 -1.2 531,419 - GFF1212 0.76 +0.2 531,660 - -1.3 531,680 + +1.5 531,681 - +0.6 531,686 + +1.7 531,686 + +0.3 531,687 - +0.3 531,687 - -0.1
Or see this region's nucleotide sequence