Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1140 and GFF1141 are separated by 7 nucleotides GFF1141 and GFF1142 overlap by 1 nucleotides
GFF1140 - Domain of unknown function / Efflux ABC transporter, permease protein, at 455,408 to 456,592
GFF1140
GFF1141 - Membrane-fusion protein, at 456,600 to 457,586
GFF1141
GFF1142 - Efflux transport system, outer membrane factor (OMF) lipoprotein, at 457,586 to 459,019
GFF1142
Position (kb) 456
457
458 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 456.036 kb on + strand, within GFF1140 at 456.036 kb on + strand, within GFF1140 at 456.036 kb on + strand, within GFF1140 at 456.036 kb on + strand, within GFF1140 at 456.037 kb on - strand, within GFF1140 at 456.092 kb on + strand, within GFF1140 at 456.092 kb on + strand, within GFF1140 at 456.093 kb on - strand, within GFF1140 at 456.093 kb on - strand, within GFF1140 at 456.093 kb on - strand, within GFF1140 at 456.093 kb on - strand, within GFF1140 at 456.345 kb on + strand, within GFF1140 at 456.345 kb on + strand, within GFF1140 at 456.346 kb on - strand, within GFF1140 at 456.346 kb on - strand, within GFF1140 at 456.346 kb on - strand, within GFF1140 at 456.346 kb on - strand, within GFF1140 at 456.742 kb on + strand, within GFF1141 at 456.742 kb on + strand, within GFF1141 at 456.742 kb on + strand, within GFF1141 at 456.742 kb on + strand, within GFF1141 at 456.742 kb on + strand, within GFF1141 at 456.742 kb on + strand, within GFF1141 at 456.742 kb on + strand, within GFF1141 at 456.742 kb on + strand, within GFF1141 at 456.743 kb on - strand, within GFF1141 at 456.743 kb on - strand, within GFF1141 at 456.743 kb on - strand, within GFF1141 at 456.743 kb on - strand, within GFF1141 at 456.743 kb on - strand, within GFF1141 at 456.743 kb on - strand, within GFF1141 at 456.743 kb on - strand, within GFF1141 at 456.745 kb on + strand, within GFF1141 at 456.745 kb on + strand, within GFF1141 at 456.745 kb on + strand, within GFF1141 at 456.745 kb on + strand, within GFF1141 at 456.745 kb on + strand, within GFF1141 at 456.746 kb on - strand, within GFF1141 at 456.746 kb on - strand, within GFF1141 at 456.746 kb on - strand, within GFF1141 at 456.746 kb on - strand, within GFF1141 at 456.746 kb on - strand, within GFF1141 at 457.078 kb on + strand, within GFF1141 at 457.078 kb on + strand, within GFF1141 at 457.078 kb on + strand, within GFF1141 at 457.078 kb on + strand, within GFF1141 at 457.078 kb on + strand, within GFF1141 at 457.078 kb on + strand, within GFF1141 at 457.079 kb on - strand, within GFF1141 at 457.079 kb on - strand, within GFF1141 at 457.079 kb on - strand, within GFF1141 at 457.079 kb on - strand, within GFF1141 at 457.617 kb on + strand at 457.617 kb on + strand at 457.617 kb on + strand at 457.617 kb on + strand at 457.617 kb on + strand at 457.618 kb on - strand at 457.618 kb on - strand at 457.618 kb on - strand at 457.677 kb on + strand at 457.677 kb on + strand at 457.677 kb on + strand at 457.678 kb on - strand at 457.678 kb on - strand at 457.678 kb on - strand at 457.678 kb on - strand at 457.678 kb on - strand at 457.678 kb on - strand at 457.833 kb on + strand, within GFF1142 at 457.834 kb on - strand, within GFF1142 at 457.977 kb on + strand, within GFF1142 at 457.977 kb on + strand, within GFF1142 at 457.977 kb on + strand, within GFF1142 at 457.977 kb on + strand, within GFF1142 at 457.978 kb on - strand, within GFF1142 at 457.978 kb on - strand, within GFF1142 at 457.978 kb on - strand, within GFF1142 at 457.978 kb on - strand, within GFF1142 at 458.166 kb on + strand, within GFF1142 at 458.166 kb on + strand, within GFF1142 at 458.167 kb on - strand, within GFF1142 at 458.313 kb on + strand, within GFF1142 at 458.313 kb on + strand, within GFF1142 at 458.314 kb on - strand, within GFF1142 at 458.314 kb on - strand, within GFF1142 at 458.314 kb on - strand, within GFF1142 at 458.457 kb on + strand, within GFF1142 at 458.457 kb on + strand, within GFF1142 at 458.571 kb on + strand, within GFF1142 at 458.571 kb on + strand, within GFF1142 at 458.571 kb on + strand, within GFF1142 at 458.571 kb on + strand, within GFF1142 at 458.571 kb on + strand, within GFF1142 at 458.571 kb on + strand, within GFF1142 at 458.571 kb on + strand, within GFF1142 at 458.571 kb on + strand, within GFF1142 at 458.571 kb on + strand, within GFF1142 at 458.572 kb on - strand, within GFF1142 at 458.572 kb on - strand, within GFF1142 at 458.572 kb on - strand, within GFF1142 at 458.572 kb on - strand, within GFF1142 at 458.572 kb on - strand, within GFF1142 at 458.572 kb on - strand, within GFF1142 at 458.572 kb on - strand, within GFF1142 at 458.572 kb on - strand, within GFF1142 at 458.572 kb on - strand, within GFF1142 at 458.572 kb on - strand, within GFF1142 at 458.572 kb on - strand, within GFF1142 at 458.572 kb on - strand, within GFF1142 at 458.572 kb on - strand, within GFF1142
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 456,036 + GFF1140 0.53 -0.0 456,036 + GFF1140 0.53 +1.9 456,036 + GFF1140 0.53 -2.0 456,036 + GFF1140 0.53 -0.6 456,037 - GFF1140 0.53 +0.3 456,092 + GFF1140 0.58 +0.3 456,092 + GFF1140 0.58 +1.0 456,093 - GFF1140 0.58 -0.4 456,093 - GFF1140 0.58 -0.9 456,093 - GFF1140 0.58 +0.9 456,093 - GFF1140 0.58 -1.3 456,345 + GFF1140 0.79 +1.3 456,345 + GFF1140 0.79 -0.6 456,346 - GFF1140 0.79 +0.1 456,346 - GFF1140 0.79 -0.1 456,346 - GFF1140 0.79 -0.4 456,346 - GFF1140 0.79 -1.7 456,742 + GFF1141 0.14 -1.2 456,742 + GFF1141 0.14 +1.7 456,742 + GFF1141 0.14 -1.8 456,742 + GFF1141 0.14 +1.9 456,742 + GFF1141 0.14 +0.1 456,742 + GFF1141 0.14 -3.0 456,742 + GFF1141 0.14 -2.3 456,742 + GFF1141 0.14 -1.1 456,743 - GFF1141 0.14 -1.6 456,743 - GFF1141 0.14 -3.3 456,743 - GFF1141 0.14 -1.6 456,743 - GFF1141 0.14 -0.4 456,743 - GFF1141 0.14 -1.8 456,743 - GFF1141 0.14 +0.2 456,743 - GFF1141 0.14 -0.7 456,745 + GFF1141 0.15 +0.1 456,745 + GFF1141 0.15 +1.3 456,745 + GFF1141 0.15 +0.2 456,745 + GFF1141 0.15 +1.1 456,745 + GFF1141 0.15 -0.7 456,746 - GFF1141 0.15 +0.7 456,746 - GFF1141 0.15 -0.7 456,746 - GFF1141 0.15 -0.7 456,746 - GFF1141 0.15 -1.1 456,746 - GFF1141 0.15 -1.5 457,078 + GFF1141 0.48 -1.7 457,078 + GFF1141 0.48 -2.3 457,078 + GFF1141 0.48 -1.3 457,078 + GFF1141 0.48 -2.2 457,078 + GFF1141 0.48 -0.5 457,078 + GFF1141 0.48 -2.0 457,079 - GFF1141 0.49 -1.9 457,079 - GFF1141 0.49 -1.0 457,079 - GFF1141 0.49 -3.5 457,079 - GFF1141 0.49 -4.6 457,617 + -0.9 457,617 + -0.9 457,617 + -0.2 457,617 + -2.3 457,617 + +0.9 457,618 - -2.4 457,618 - +0.5 457,618 - -1.3 457,677 + +0.3 457,677 + -0.6 457,677 + -1.0 457,678 - +1.9 457,678 - +3.0 457,678 - +0.9 457,678 - -2.2 457,678 - -2.9 457,678 - +1.5 457,833 + GFF1142 0.17 +0.3 457,834 - GFF1142 0.17 +0.7 457,977 + GFF1142 0.27 -1.4 457,977 + GFF1142 0.27 -0.3 457,977 + GFF1142 0.27 -2.2 457,977 + GFF1142 0.27 -0.1 457,978 - GFF1142 0.27 -2.0 457,978 - GFF1142 0.27 -0.1 457,978 - GFF1142 0.27 -0.6 457,978 - GFF1142 0.27 -1.1 458,166 + GFF1142 0.40 -1.6 458,166 + GFF1142 0.40 -0.1 458,167 - GFF1142 0.41 -1.3 458,313 + GFF1142 0.51 -1.1 458,313 + GFF1142 0.51 +0.6 458,314 - GFF1142 0.51 +0.2 458,314 - GFF1142 0.51 -0.5 458,314 - GFF1142 0.51 +1.6 458,457 + GFF1142 0.61 +0.3 458,457 + GFF1142 0.61 -0.5 458,571 + GFF1142 0.69 -2.3 458,571 + GFF1142 0.69 +0.6 458,571 + GFF1142 0.69 -3.5 458,571 + GFF1142 0.69 -0.1 458,571 + GFF1142 0.69 -1.8 458,571 + GFF1142 0.69 -0.2 458,571 + GFF1142 0.69 -4.1 458,571 + GFF1142 0.69 -1.5 458,571 + GFF1142 0.69 -0.1 458,572 - GFF1142 0.69 -1.7 458,572 - GFF1142 0.69 +0.1 458,572 - GFF1142 0.69 -2.9 458,572 - GFF1142 0.69 -2.1 458,572 - GFF1142 0.69 -1.2 458,572 - GFF1142 0.69 -1.1 458,572 - GFF1142 0.69 -0.4 458,572 - GFF1142 0.69 +0.6 458,572 - GFF1142 0.69 -0.7 458,572 - GFF1142 0.69 -0.5 458,572 - GFF1142 0.69 -0.3 458,572 - GFF1142 0.69 -1.3 458,572 - GFF1142 0.69 -0.5
Or see this region's nucleotide sequence