Strain Fitness in Variovorax sp. SCN45 around GFF109

Experiment: Community=guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=guar; Passage=4
135,623	+		GFF107	0.77	+1.2
135,623	+		GFF107	0.77	-0.4
136,015	+		GFF108	0.21	-1.2
136,016	-		GFF108	0.21	-0.5
136,016	-		GFF108	0.21	-0.6
136,021	+		GFF108	0.23	-1.1
136,138	+		GFF108	0.47	+0.0
136,139	-		GFF108	0.48	-2.7
137,142	+		GFF109	0.23	-0.2
137,154	-		GFF109	0.23	-0.4
137,850	+		GFF109	0.49	-0.5
138,180	+		GFF109	0.61	+1.2
138,180	+		GFF109	0.61	-0.8
138,180	+		GFF109	0.61	-0.3
138,180	+		GFF109	0.61	-2.5
138,180	+		GFF109	0.61	+2.1
138,180	+		GFF109	0.61	-0.2
138,181	-		GFF109	0.61	+1.0
138,181	-		GFF109	0.61	-0.5
138,181	-		GFF109	0.61	-3.1
138,280	+		GFF109	0.65	-0.1
138,280	+		GFF109	0.65	+0.7
138,280	+		GFF109	0.65	-2.6
138,280	+		GFF109	0.65	-0.2
138,280	+		GFF109	0.65	+0.1
138,281	-		GFF109	0.65	-1.9
138,281	-		GFF109	0.65	-1.4
138,281	-		GFF109	0.65	+1.8
138,282	+		GFF109	0.65	-0.5
138,282	+		GFF109	0.65	+1.2
138,282	+		GFF109	0.65	-2.5
138,282	+		GFF109	0.65	-0.7
138,282	+		GFF109	0.65	-2.9
138,283	-		GFF109	0.65	-1.2
138,283	-		GFF109	0.65	+0.6
138,732	+		GFF109	0.82	-0.5
138,732	+		GFF109	0.82	-2.2
138,732	+		GFF109	0.82	-0.5
138,732	+		GFF109	0.82	-2.2
138,732	+		GFF109	0.82	-1.9
138,733	-		GFF109	0.82	-1.6
138,733	-		GFF109	0.82	-1.2
138,733	-		GFF109	0.82	+3.7
138,879	+		GFF109	0.87	+0.2
138,978	+				-1.5
138,978	+				-0.8
138,979	-				-0.9
138,979	-				-0.2
139,218	+				-2.2
139,218	+				+0.7
139,218	+				-0.8
139,218	+				-1.9
139,218	+				+0.8
139,219	-				-0.4
139,219	-				-0.1
139,219	-				+0.2
139,219	-				-1.5
139,219	-				+1.2
139,227	+				-0.8
139,442	+		GFF110	0.21	+0.1
139,442	+		GFF110	0.21	+0.2
139,443	-		GFF110	0.21	-1.8
139,443	-		GFF110	0.21	+0.5
139,553	+		GFF110	0.33	-1.0
139,553	+		GFF110	0.33	-3.5
139,553	+		GFF110	0.33	-0.3
139,553	+		GFF110	0.33	+2.0
139,554	-		GFF110	0.33	-3.5
139,745	+		GFF110	0.53	+1.0
139,746	-		GFF110	0.53	+0.1
139,746	-		GFF110	0.53	+0.4
139,746	-		GFF110	0.53	-0.6
139,746	-		GFF110	0.53	-0.2
139,928	+		GFF110	0.72	-1.5
139,928	+		GFF110	0.72	+0.2
139,928	+		GFF110	0.72	-0.8
139,929	-		GFF110	0.72	-4.3
140,121	+				+2.0
140,132	+				+0.2
140,132	+				-3.2