Strain Fitness in Variovorax sp. SCN45 around GFF9

Experiment: Community=guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=guar; Passage=4
6,934	+		GFF8	0.57	-0.2
6,935	-		GFF8	0.57	-1.3
7,139	-		GFF8	0.70	-1.2
7,238	-		GFF8	0.77	+1.8
7,477	+				-2.6
7,477	+				-1.9
7,477	+				-0.0
7,478	-				-2.3
7,478	-				-1.2
7,478	-				+1.4
7,478	-				+1.0
7,478	-				+1.4
7,510	+				+1.8
7,510	+				+0.9
7,510	+				-2.0
7,511	-				+0.1
7,934	-		GFF9	0.10	-2.3
8,092	+		GFF9	0.16	+0.9
8,093	-		GFF9	0.16	-2.3
8,243	+		GFF9	0.20	-1.8
8,244	-		GFF9	0.20	-1.9
8,244	-		GFF9	0.20	-2.5
8,453	+		GFF9	0.27	-3.2
8,454	-		GFF9	0.27	-1.5
8,454	-		GFF9	0.27	+1.3
8,454	-		GFF9	0.27	-2.0
8,471	+		GFF9	0.28	-2.0
8,472	-		GFF9	0.28	+1.0
8,472	-		GFF9	0.28	+0.5
8,589	+		GFF9	0.32	+1.0
8,693	+		GFF9	0.35	-2.7
8,693	+		GFF9	0.35	-0.6
8,694	-		GFF9	0.35	+1.2
8,694	-		GFF9	0.35	+1.7
8,770	+		GFF9	0.37	+1.2
8,770	+		GFF9	0.37	-0.6
8,771	-		GFF9	0.37	-3.7
8,771	-		GFF9	0.37	+1.7
8,771	-		GFF9	0.37	-2.5
8,771	-		GFF9	0.37	-3.5
8,771	-		GFF9	0.37	-2.0
8,856	-		GFF9	0.40	-2.7
8,942	+		GFF9	0.43	-0.2
8,942	+		GFF9	0.43	+0.2
8,942	+		GFF9	0.43	-0.2
8,942	+		GFF9	0.43	-1.6
8,942	+		GFF9	0.43	+0.9
8,943	-		GFF9	0.43	-1.2
8,943	-		GFF9	0.43	+0.1
8,943	-		GFF9	0.43	-2.6
9,134	+		GFF9	0.49	+0.1
9,245	+		GFF9	0.53	-0.3
9,246	-		GFF9	0.53	-0.6
9,246	-		GFF9	0.53	-2.7
9,246	-		GFF9	0.53	+1.3
9,299	+		GFF9	0.54	+0.2
9,299	+		GFF9	0.54	-4.0
9,299	+		GFF9	0.54	+1.0
9,300	-		GFF9	0.55	-0.4
9,300	-		GFF9	0.55	-1.6
9,368	+		GFF9	0.57	-3.1
9,749	+		GFF9	0.69	-0.2
9,750	-		GFF9	0.69	-0.2
9,750	-		GFF9	0.69	-2.7
9,750	-		GFF9	0.69	+0.9
9,750	-		GFF9	0.69	-0.2
9,750	-		GFF9	0.69	-0.4
9,842	+		GFF9	0.72	+0.5
9,843	-		GFF9	0.72	+0.4
10,034	+		GFF9	0.78	-2.9
10,034	+		GFF9	0.78	-1.2
10,034	+		GFF9	0.78	-3.2
10,034	+		GFF9	0.78	-3.0
10,035	-		GFF9	0.78	-0.3
10,035	-		GFF9	0.78	-1.3
10,035	-		GFF9	0.78	-0.2
10,035	-		GFF9	0.78	-0.9
10,124	+		GFF9	0.81	+0.3
10,124	+		GFF9	0.81	-0.7
10,289	+		GFF9	0.86	+0.3
10,290	-		GFF9	0.86	+0.2
10,295	+		GFF9	0.87	+1.8
10,295	+		GFF9	0.87	-0.2
10,296	-		GFF9	0.87	-2.0
10,296	-		GFF9	0.87	-1.0
10,397	+		GFF9	0.90	-0.5
10,397	+		GFF9	0.90	-0.4
10,398	-				+0.5
10,592	+				+0.4
10,592	+				-2.9
10,701	+				-0.7
10,701	+				-0.2
10,929	+		GFF10	0.20	-1.6
10,929	+		GFF10	0.20	-2.4
10,929	+		GFF10	0.20	-3.7
10,929	+		GFF10	0.20	+1.4
10,929	+		GFF10	0.20	-2.4
10,929	+		GFF10	0.20	+1.6
10,929	+		GFF10	0.20	+0.8
10,929	+		GFF10	0.20	-0.9
10,929	+		GFF10	0.20	+0.4
10,930	-		GFF10	0.20	+1.1
10,930	-		GFF10	0.20	+2.9
10,930	-		GFF10	0.20	+0.8
10,930	-		GFF10	0.20	+0.6
10,930	-		GFF10	0.20	+0.4
10,930	-		GFF10	0.20	+0.7
10,930	-		GFF10	0.20	+0.3
10,930	-		GFF10	0.20	+0.9
10,930	-		GFF10	0.20	-1.2
11,597	+		GFF10	0.78	+1.4
11,597	+		GFF10	0.78	+0.4
11,598	-		GFF10	0.78	-2.0
11,598	-		GFF10	0.78	-2.2