Strain Fitness in Variovorax sp. SCN45 around GFF838

Experiment: Community=guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=guar; Passage=4
142,605	+				+1.6
142,605	+				-3.9
142,605	+				-3.0
142,606	-				+1.2
142,758	+		GFF837	0.18	+0.3
142,758	+		GFF837	0.18	+0.8
142,759	-		GFF837	0.18	-0.4
142,759	-		GFF837	0.18	-0.4
142,782	+		GFF837	0.21	-2.8
142,782	+		GFF837	0.21	-2.9
143,278	-		GFF837	0.79	-1.2
143,319	+		GFF837	0.84	+2.0
143,319	+		GFF837	0.84	-2.9
143,319	+		GFF837	0.84	-2.3
143,319	+		GFF837	0.84	+0.5
143,320	-		GFF837	0.84	+0.3
143,361	+		GFF837	0.89	-2.5
143,361	+		GFF837	0.89	+0.6
143,361	+		GFF837	0.89	-1.0
143,361	+		GFF837	0.89	-0.9
143,362	-		GFF837	0.89	+1.5
143,362	-		GFF837	0.89	-0.1
143,362	-		GFF837	0.89	-2.8
143,495	+				-2.0
143,496	-				-1.5
143,525	+				+4.0
143,804	+		GFF838	0.32	-1.2
143,849	+		GFF838	0.36	+0.2
143,849	+		GFF838	0.36	+2.0
143,849	+		GFF838	0.36	+1.7
143,850	-		GFF838	0.36	-1.8
143,864	+		GFF838	0.37	-0.5
143,865	-		GFF838	0.38	+0.6
144,269	+		GFF838	0.74	-1.7
144,531	-				+2.3
144,599	+				+0.3
144,763	+				+1.4
144,763	+				-1.0
144,763	+				-2.5
144,764	-				-2.1
144,783	+				-1.7
144,784	-				+1.1
145,036	+				-2.0
145,036	+				+1.6
145,036	+				-1.0
145,036	+				+0.4
145,036	+				+1.0
145,037	-				+0.6
145,037	-				+0.9
145,037	-				+1.4
145,037	-				+0.8
145,427	-		GFF839	0.29	-1.7
145,427	-		GFF839	0.29	+1.1