Strain Fitness in Variovorax sp. SCN45 around GFF831

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF830 and GFF831 are separated by 224 nucleotidesGFF831 and GFF832 are separated by 42 nucleotidesGFF832 and GFF833 are separated by 16 nucleotidesGFF833 and GFF834 are separated by 13 nucleotides GFF830 - ChlI component of cobalt chelatase involved in B12 biosynthesis, at 136,876 to 137,943 GFF830 GFF831 - ChlD component of cobalt chelatase involved in B12 biosynthesis, at 138,168 to 138,581 GFF831 GFF832 - hypothetical protein, at 138,624 to 138,956 GFF832 GFF833 - Proteins containing SET domain, at 138,973 to 139,461 GFF833 GFF834 - hypothetical protein, at 139,475 to 140,344 GFF834 Position (kb) 138 139Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 137.194 kb on + strand, within GFF830at 137.194 kb on + strand, within GFF830at 137.194 kb on + strand, within GFF830at 137.195 kb on - strand, within GFF830at 137.195 kb on - strand, within GFF830at 137.195 kb on - strand, within GFF830at 137.560 kb on + strand, within GFF830at 137.560 kb on + strand, within GFF830at 138.231 kb on + strand, within GFF831at 138.231 kb on + strand, within GFF831at 138.231 kb on + strand, within GFF831at 138.231 kb on + strand, within GFF831at 138.232 kb on - strand, within GFF831at 138.568 kb on - strandat 138.579 kb on + strandat 138.580 kb on - strandat 138.614 kb on - strandat 138.974 kb on + strandat 138.975 kb on - strandat 138.975 kb on - strandat 139.052 kb on + strand, within GFF833at 139.052 kb on + strand, within GFF833at 139.052 kb on + strand, within GFF833at 139.052 kb on + strand, within GFF833at 139.052 kb on + strand, within GFF833at 139.052 kb on + strand, within GFF833at 139.053 kb on - strand, within GFF833at 139.091 kb on + strand, within GFF833at 139.091 kb on + strand, within GFF833at 139.092 kb on - strand, within GFF833at 139.092 kb on - strand, within GFF833at 139.092 kb on - strand, within GFF833at 139.169 kb on + strand, within GFF833at 139.277 kb on + strand, within GFF833at 139.277 kb on + strand, within GFF833at 139.277 kb on + strand, within GFF833at 139.277 kb on + strand, within GFF833at 139.277 kb on + strand, within GFF833at 139.277 kb on + strand, within GFF833at 139.277 kb on + strand, within GFF833at 139.277 kb on + strand, within GFF833at 139.277 kb on + strand, within GFF833at 139.277 kb on + strand, within GFF833at 139.277 kb on + strand, within GFF833at 139.277 kb on + strand, within GFF833at 139.278 kb on - strand, within GFF833at 139.278 kb on - strand, within GFF833at 139.278 kb on - strand, within GFF833at 139.278 kb on - strand, within GFF833at 139.278 kb on - strand, within GFF833at 139.278 kb on - strand, within GFF833at 139.278 kb on - strand, within GFF833at 139.278 kb on - strand, within GFF833at 139.278 kb on - strand, within GFF833at 139.325 kb on + strand, within GFF833at 139.326 kb on - strand, within GFF833at 139.340 kb on + strand, within GFF833at 139.340 kb on + strand, within GFF833at 139.341 kb on - strand, within GFF833at 139.341 kb on - strand, within GFF833

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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137,194 + GFF830 0.30 -0.0
137,194 + GFF830 0.30 -1.7
137,194 + GFF830 0.30 -0.7
137,195 - GFF830 0.30 -1.0
137,195 - GFF830 0.30 -2.5
137,195 - GFF830 0.30 -1.4
137,560 + GFF830 0.64 -1.8
137,560 + GFF830 0.64 -3.9
138,231 + GFF831 0.15 -1.8
138,231 + GFF831 0.15 -2.1
138,231 + GFF831 0.15 -1.7
138,231 + GFF831 0.15 -1.4
138,232 - GFF831 0.15 -1.8
138,568 - -0.1
138,579 + +1.9
138,580 - +0.4
138,614 - -1.7
138,974 + -1.2
138,975 - -2.3
138,975 - -3.1
139,052 + GFF833 0.16 -0.3
139,052 + GFF833 0.16 -1.5
139,052 + GFF833 0.16 +0.2
139,052 + GFF833 0.16 -0.4
139,052 + GFF833 0.16 +0.9
139,052 + GFF833 0.16 -0.3
139,053 - GFF833 0.16 -1.0
139,091 + GFF833 0.24 +0.3
139,091 + GFF833 0.24 +0.5
139,092 - GFF833 0.24 +0.5
139,092 - GFF833 0.24 -1.4
139,092 - GFF833 0.24 +1.2
139,169 + GFF833 0.40 -3.1
139,277 + GFF833 0.62 +0.0
139,277 + GFF833 0.62 -1.7
139,277 + GFF833 0.62 -0.2
139,277 + GFF833 0.62 +0.2
139,277 + GFF833 0.62 +0.3
139,277 + GFF833 0.62 +0.8
139,277 + GFF833 0.62 -0.4
139,277 + GFF833 0.62 +0.0
139,277 + GFF833 0.62 -0.8
139,277 + GFF833 0.62 -3.1
139,277 + GFF833 0.62 +0.7
139,277 + GFF833 0.62 -0.0
139,278 - GFF833 0.62 -1.4
139,278 - GFF833 0.62 -0.0
139,278 - GFF833 0.62 +0.5
139,278 - GFF833 0.62 -2.3
139,278 - GFF833 0.62 -2.4
139,278 - GFF833 0.62 -1.0
139,278 - GFF833 0.62 -3.1
139,278 - GFF833 0.62 -1.2
139,278 - GFF833 0.62 +0.0
139,325 + GFF833 0.72 +0.3
139,326 - GFF833 0.72 +0.4
139,340 + GFF833 0.75 +0.3
139,340 + GFF833 0.75 +0.6
139,341 - GFF833 0.75 +0.6
139,341 - GFF833 0.75 -1.1

Or see this region's nucleotide sequence