Strain Fitness in Variovorax sp. SCN45 around GFF792

Experiment: Community=guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=guar; Passage=4
83,503	+		GFF790	0.38	-0.2
83,503	+		GFF790	0.38	+0.0
83,503	+		GFF790	0.38	-1.0
83,504	-		GFF790	0.38	+0.2
83,504	-		GFF790	0.38	+0.9
83,632	+		GFF790	0.57	-0.8
83,633	-		GFF790	0.57	+0.8
83,633	-		GFF790	0.57	-2.1
83,726	+		GFF790	0.71	-1.7
83,726	+		GFF790	0.71	-0.7
83,727	-		GFF790	0.71	+0.2
83,727	-		GFF790	0.71	-0.2
83,727	-		GFF790	0.71	-2.9
83,978	+				-1.5
83,979	-				+1.1
84,107	+		GFF791	0.33	-2.0
84,107	+		GFF791	0.33	+0.0
84,107	+		GFF791	0.33	-0.1
84,107	+		GFF791	0.33	-4.3
84,107	+		GFF791	0.33	+0.4
84,108	-		GFF791	0.33	+1.6
84,108	-		GFF791	0.33	-2.2
84,108	-		GFF791	0.33	-0.4
84,137	+		GFF791	0.39	-1.0
84,137	+		GFF791	0.39	+1.4
84,138	-		GFF791	0.39	+0.2
84,465	-				+1.0
84,496	+				-1.2
84,496	+				-1.2
84,496	+				+0.1
84,496	+				-2.1
84,497	-				+0.0
84,497	-				+1.7
84,497	-				+1.1
84,497	-				+0.3
84,497	-				+0.3
84,497	-				-0.6
84,502	+				-2.4
84,502	+				+0.1
84,502	+				-0.3
84,502	+				+0.5
84,503	-				+1.5
84,503	-				-3.2
84,503	-				-0.7
84,503	-				-0.4
84,846	-		GFF792	0.35	+0.2
84,846	-		GFF792	0.35	-1.1
85,039	+		GFF792	0.54	+1.2
85,040	-		GFF792	0.54	+1.8
85,040	-		GFF792	0.54	-1.5
85,040	-		GFF792	0.54	-1.5
85,040	-		GFF792	0.54	+1.4
85,220	+		GFF792	0.72	+2.0
85,220	+		GFF792	0.72	-1.8
85,221	-		GFF792	0.72	-1.4
85,221	-		GFF792	0.72	-0.3
85,221	-		GFF792	0.72	-1.7
85,454	+				-0.8
85,454	+				-0.0
85,454	+				-0.4
85,454	+				-1.0
85,454	+				+0.6
85,455	-				+0.4
85,455	-				-2.0
85,455	-				-1.8
85,498	+				-1.0
85,498	+				+1.0
85,498	+				+3.2
85,498	+				+0.7
85,499	-				-0.4
85,499	-				-1.6
85,499	-				+0.6
85,499	-				-1.5
85,499	-				-0.7
85,499	-				-1.4
85,499	-				+0.9
85,630	+				-1.0
85,631	-				+0.5
86,447	+				+4.0
86,447	+				+1.1
86,447	+				-3.8
86,448	-				-4.0