Strain Fitness in Variovorax sp. SCN45 around GFF770

Experiment: Community=guar; Passage=4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF768 and GFF769 are separated by 33 nucleotidesGFF769 and GFF770 are separated by 41 nucleotidesGFF770 and GFF771 overlap by 4 nucleotides GFF768 - Trehalose synthase (EC 5.4.99.16), at 34,485 to 37,829 GFF768 GFF769 - Conserved TM helix, at 37,863 to 38,645 GFF769 GFF770 - Limit dextrin alpha-1,6-maltotetraose-hydrolase (EC 3.2.1.196), at 38,687 to 40,849 GFF770 GFF771 - Malto-oligosyltrehalose trehalohydrolase (EC 3.2.1.141), at 40,846 to 42,714 GFF771 Position (kb) 38 39 40 41Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 37.750 kb on - strandat 37.908 kb on + strandat 37.909 kb on - strandat 37.909 kb on - strandat 38.118 kb on + strand, within GFF769at 38.175 kb on + strand, within GFF769at 38.175 kb on + strand, within GFF769at 38.175 kb on + strand, within GFF769at 38.175 kb on + strand, within GFF769at 38.175 kb on + strand, within GFF769at 38.175 kb on + strand, within GFF769at 38.292 kb on + strand, within GFF769at 38.603 kb on + strandat 38.895 kb on - strandat 38.924 kb on + strand, within GFF770at 38.925 kb on - strand, within GFF770at 38.925 kb on - strand, within GFF770at 38.949 kb on - strand, within GFF770at 39.003 kb on - strand, within GFF770at 39.003 kb on - strand, within GFF770at 39.054 kb on - strand, within GFF770at 39.197 kb on + strand, within GFF770at 39.197 kb on + strand, within GFF770at 39.198 kb on - strand, within GFF770at 39.198 kb on - strand, within GFF770at 39.263 kb on + strand, within GFF770at 39.296 kb on + strand, within GFF770at 39.297 kb on - strand, within GFF770at 39.389 kb on + strand, within GFF770at 39.389 kb on + strand, within GFF770at 39.389 kb on + strand, within GFF770at 39.390 kb on - strand, within GFF770at 39.390 kb on - strand, within GFF770at 39.390 kb on - strand, within GFF770at 39.399 kb on - strand, within GFF770at 39.434 kb on + strand, within GFF770at 39.434 kb on + strand, within GFF770at 39.435 kb on - strand, within GFF770at 39.521 kb on + strand, within GFF770at 39.521 kb on + strand, within GFF770at 39.522 kb on - strand, within GFF770at 39.522 kb on - strand, within GFF770at 39.522 kb on - strand, within GFF770at 39.590 kb on + strand, within GFF770at 39.590 kb on + strand, within GFF770at 39.591 kb on - strand, within GFF770at 39.591 kb on - strand, within GFF770at 39.591 kb on - strand, within GFF770at 39.591 kb on - strand, within GFF770at 39.591 kb on - strand, within GFF770at 39.591 kb on - strand, within GFF770at 39.594 kb on - strand, within GFF770at 39.624 kb on - strand, within GFF770at 39.624 kb on - strand, within GFF770at 39.926 kb on + strand, within GFF770at 40.325 kb on + strand, within GFF770at 40.326 kb on - strand, within GFF770at 40.571 kb on + strand, within GFF770at 40.572 kb on - strand, within GFF770at 40.572 kb on - strand, within GFF770at 40.572 kb on - strand, within GFF770at 40.572 kb on - strand, within GFF770at 40.572 kb on - strand, within GFF770at 40.572 kb on - strand, within GFF770at 40.572 kb on - strand, within GFF770at 40.669 kb on + strandat 41.204 kb on - strand, within GFF771at 41.204 kb on - strand, within GFF771at 41.345 kb on - strand, within GFF771at 41.458 kb on + strand, within GFF771at 41.458 kb on + strand, within GFF771at 41.458 kb on + strand, within GFF771at 41.459 kb on - strand, within GFF771at 41.459 kb on - strand, within GFF771at 41.459 kb on - strand, within GFF771at 41.459 kb on - strand, within GFF771at 41.485 kb on + strand, within GFF771at 41.486 kb on - strand, within GFF771at 41.486 kb on - strand, within GFF771at 41.497 kb on + strand, within GFF771at 41.498 kb on - strand, within GFF771at 41.591 kb on - strand, within GFF771at 41.608 kb on + strand, within GFF771at 41.609 kb on - strand, within GFF771

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
remove
37,750 - -2.3
37,908 + -0.4
37,909 - +0.2
37,909 - -2.5
38,118 + GFF769 0.33 -1.8
38,175 + GFF769 0.40 +0.0
38,175 + GFF769 0.40 -1.7
38,175 + GFF769 0.40 -1.7
38,175 + GFF769 0.40 -2.1
38,175 + GFF769 0.40 -3.3
38,175 + GFF769 0.40 -0.2
38,292 + GFF769 0.55 -0.4
38,603 + -0.4
38,895 - +0.0
38,924 + GFF770 0.11 +0.9
38,925 - GFF770 0.11 +1.6
38,925 - GFF770 0.11 +1.2
38,949 - GFF770 0.12 +0.3
39,003 - GFF770 0.15 +0.0
39,003 - GFF770 0.15 +1.7
39,054 - GFF770 0.17 -2.5
39,197 + GFF770 0.24 -2.5
39,197 + GFF770 0.24 +0.9
39,198 - GFF770 0.24 -2.1
39,198 - GFF770 0.24 -0.5
39,263 + GFF770 0.27 +1.0
39,296 + GFF770 0.28 -3.0
39,297 - GFF770 0.28 +1.2
39,389 + GFF770 0.32 -0.8
39,389 + GFF770 0.32 +1.6
39,389 + GFF770 0.32 -0.7
39,390 - GFF770 0.33 -0.4
39,390 - GFF770 0.33 +0.5
39,390 - GFF770 0.33 +1.2
39,399 - GFF770 0.33 -0.0
39,434 + GFF770 0.35 -0.4
39,434 + GFF770 0.35 -2.5
39,435 - GFF770 0.35 -1.0
39,521 + GFF770 0.39 +1.1
39,521 + GFF770 0.39 -0.3
39,522 - GFF770 0.39 +0.0
39,522 - GFF770 0.39 -0.1
39,522 - GFF770 0.39 +1.9
39,590 + GFF770 0.42 +1.6
39,590 + GFF770 0.42 +0.6
39,591 - GFF770 0.42 +1.0
39,591 - GFF770 0.42 +2.0
39,591 - GFF770 0.42 -2.0
39,591 - GFF770 0.42 -0.4
39,591 - GFF770 0.42 -2.4
39,591 - GFF770 0.42 -1.0
39,594 - GFF770 0.42 +0.4
39,624 - GFF770 0.43 +1.1
39,624 - GFF770 0.43 +0.4
39,926 + GFF770 0.57 -3.9
40,325 + GFF770 0.76 +0.4
40,326 - GFF770 0.76 -3.0
40,571 + GFF770 0.87 +0.1
40,572 - GFF770 0.87 -1.4
40,572 - GFF770 0.87 -1.2
40,572 - GFF770 0.87 +0.7
40,572 - GFF770 0.87 +2.0
40,572 - GFF770 0.87 -1.7
40,572 - GFF770 0.87 +1.4
40,572 - GFF770 0.87 -2.4
40,669 + -0.8
41,204 - GFF771 0.19 +0.2
41,204 - GFF771 0.19 -2.4
41,345 - GFF771 0.27 +0.0
41,458 + GFF771 0.33 +2.4
41,458 + GFF771 0.33 +0.3
41,458 + GFF771 0.33 -0.9
41,459 - GFF771 0.33 +0.5
41,459 - GFF771 0.33 +0.7
41,459 - GFF771 0.33 +0.2
41,459 - GFF771 0.33 -1.4
41,485 + GFF771 0.34 -1.4
41,486 - GFF771 0.34 +2.2
41,486 - GFF771 0.34 -0.5
41,497 + GFF771 0.35 -0.7
41,498 - GFF771 0.35 +1.9
41,591 - GFF771 0.40 -0.0
41,608 + GFF771 0.41 -3.8
41,609 - GFF771 0.41 +0.3

Or see this region's nucleotide sequence