Strain Fitness in Variovorax sp. SCN45 around GFF764

Experiment: Community=guar; Passage=4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF762 and GFF763 are separated by 5 nucleotidesGFF763 and GFF764 are separated by 29 nucleotidesGFF764 and GFF765 are separated by 211 nucleotidesGFF765 and GFF766 are separated by 184 nucleotides GFF762 - hypothetical protein, at 27,299 to 27,487 GFF762 GFF763 - Transporter, LysE family, at 27,493 to 28,122 GFF763 GFF764 - hypothetical protein, at 28,152 to 29,831 GFF764 GFF765 - hypothetical protein, at 30,043 to 30,309 GFF765 GFF766 - 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18), at 30,494 to 32,404 GFF766 Position (kb) 28 29 30Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 27.278 kb on + strandat 27.278 kb on + strandat 27.278 kb on + strandat 27.279 kb on - strandat 27.279 kb on - strandat 27.279 kb on - strandat 27.279 kb on - strandat 27.279 kb on - strandat 27.407 kb on + strand, within GFF762at 27.467 kb on + strand, within GFF762at 27.671 kb on + strand, within GFF763at 27.671 kb on + strand, within GFF763at 27.672 kb on - strand, within GFF763at 27.858 kb on - strand, within GFF763at 27.858 kb on - strand, within GFF763at 27.858 kb on - strand, within GFF763at 27.858 kb on - strand, within GFF763at 27.875 kb on + strand, within GFF763at 27.875 kb on + strand, within GFF763at 27.875 kb on + strand, within GFF763at 27.875 kb on + strand, within GFF763at 27.876 kb on - strand, within GFF763at 28.094 kb on + strandat 28.094 kb on + strandat 28.095 kb on - strandat 28.095 kb on - strandat 28.301 kb on - strandat 28.301 kb on - strandat 28.301 kb on - strandat 28.384 kb on + strand, within GFF764at 28.384 kb on + strand, within GFF764at 28.384 kb on + strand, within GFF764at 28.384 kb on + strand, within GFF764at 28.385 kb on - strand, within GFF764at 28.385 kb on - strand, within GFF764at 28.385 kb on - strand, within GFF764at 28.385 kb on - strand, within GFF764at 28.385 kb on - strand, within GFF764at 28.567 kb on + strand, within GFF764at 28.568 kb on - strand, within GFF764at 28.568 kb on - strand, within GFF764at 28.568 kb on - strand, within GFF764at 28.568 kb on - strand, within GFF764at 28.568 kb on - strand, within GFF764at 28.678 kb on + strand, within GFF764at 28.678 kb on + strand, within GFF764at 28.678 kb on + strand, within GFF764at 28.678 kb on + strand, within GFF764at 28.678 kb on + strand, within GFF764at 28.679 kb on - strand, within GFF764at 28.679 kb on - strand, within GFF764at 28.679 kb on - strand, within GFF764at 28.679 kb on - strand, within GFF764at 28.679 kb on - strand, within GFF764at 28.936 kb on + strand, within GFF764at 28.936 kb on + strand, within GFF764at 28.936 kb on + strand, within GFF764at 28.972 kb on + strand, within GFF764at 28.973 kb on - strand, within GFF764at 28.973 kb on - strand, within GFF764at 28.973 kb on - strand, within GFF764at 29.069 kb on - strand, within GFF764at 29.185 kb on + strand, within GFF764at 29.185 kb on + strand, within GFF764at 29.185 kb on + strand, within GFF764at 29.185 kb on + strand, within GFF764at 29.185 kb on + strand, within GFF764at 29.185 kb on + strand, within GFF764at 29.185 kb on + strand, within GFF764at 29.186 kb on - strand, within GFF764at 29.186 kb on - strand, within GFF764at 29.186 kb on - strand, within GFF764at 29.186 kb on - strand, within GFF764at 29.186 kb on - strand, within GFF764at 29.533 kb on + strand, within GFF764at 29.533 kb on + strand, within GFF764at 29.533 kb on + strand, within GFF764at 29.533 kb on + strand, within GFF764at 29.534 kb on - strand, within GFF764at 29.534 kb on - strand, within GFF764at 29.534 kb on - strand, within GFF764at 29.534 kb on - strand, within GFF764at 29.534 kb on - strand, within GFF764at 29.534 kb on - strand, within GFF764at 29.536 kb on + strand, within GFF764at 29.537 kb on - strand, within GFF764at 29.537 kb on - strand, within GFF764at 29.551 kb on + strand, within GFF764at 29.635 kb on + strand, within GFF764at 29.897 kb on - strandat 29.949 kb on - strandat 30.042 kb on + strandat 30.061 kb on + strandat 30.061 kb on + strandat 30.061 kb on + strandat 30.061 kb on + strandat 30.061 kb on + strandat 30.061 kb on + strandat 30.062 kb on - strandat 30.062 kb on - strandat 30.062 kb on - strandat 30.062 kb on - strandat 30.062 kb on - strandat 30.062 kb on - strandat 30.062 kb on - strandat 30.097 kb on + strand, within GFF765at 30.098 kb on - strand, within GFF765at 30.224 kb on + strand, within GFF765at 30.247 kb on + strand, within GFF765at 30.539 kb on + strandat 30.572 kb on + strandat 30.573 kb on - strandat 30.625 kb on - strandat 30.671 kb on + strandat 30.671 kb on + strandat 30.671 kb on + strandat 30.672 kb on - strandat 30.672 kb on - strandat 30.738 kb on + strand, within GFF766at 30.738 kb on + strand, within GFF766at 30.764 kb on + strand, within GFF766at 30.765 kb on - strand, within GFF766at 30.765 kb on - strand, within GFF766at 30.765 kb on - strand, within GFF766at 30.765 kb on - strand, within GFF766at 30.770 kb on + strand, within GFF766at 30.770 kb on + strand, within GFF766

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
remove
27,278 + -0.7
27,278 + -0.6
27,278 + +0.2
27,279 - +4.1
27,279 - +2.0
27,279 - +0.0
27,279 - -1.8
27,279 - -0.4
27,407 + GFF762 0.57 -2.3
27,467 + GFF762 0.89 -1.0
27,671 + GFF763 0.28 +0.5
27,671 + GFF763 0.28 +0.8
27,672 - GFF763 0.28 +0.0
27,858 - GFF763 0.58 -2.8
27,858 - GFF763 0.58 +1.0
27,858 - GFF763 0.58 -1.2
27,858 - GFF763 0.58 -2.2
27,875 + GFF763 0.61 +2.3
27,875 + GFF763 0.61 +0.2
27,875 + GFF763 0.61 -2.0
27,875 + GFF763 0.61 -2.2
27,876 - GFF763 0.61 -0.1
28,094 + -0.8
28,094 + +0.9
28,095 - +0.6
28,095 - +0.8
28,301 - -0.1
28,301 - -2.6
28,301 - +0.2
28,384 + GFF764 0.14 +0.5
28,384 + GFF764 0.14 -0.2
28,384 + GFF764 0.14 -0.4
28,384 + GFF764 0.14 -2.5
28,385 - GFF764 0.14 +0.4
28,385 - GFF764 0.14 +0.0
28,385 - GFF764 0.14 -1.0
28,385 - GFF764 0.14 -1.2
28,385 - GFF764 0.14 -2.1
28,567 + GFF764 0.25 -0.8
28,568 - GFF764 0.25 -1.7
28,568 - GFF764 0.25 -0.5
28,568 - GFF764 0.25 +0.6
28,568 - GFF764 0.25 -3.4
28,568 - GFF764 0.25 -1.7
28,678 + GFF764 0.31 -1.2
28,678 + GFF764 0.31 +0.4
28,678 + GFF764 0.31 +0.5
28,678 + GFF764 0.31 +0.6
28,678 + GFF764 0.31 +0.8
28,679 - GFF764 0.31 -1.1
28,679 - GFF764 0.31 -1.2
28,679 - GFF764 0.31 +1.6
28,679 - GFF764 0.31 -0.4
28,679 - GFF764 0.31 -1.6
28,936 + GFF764 0.47 +0.0
28,936 + GFF764 0.47 -1.8
28,936 + GFF764 0.47 -1.0
28,972 + GFF764 0.49 +0.6
28,973 - GFF764 0.49 -2.4
28,973 - GFF764 0.49 -1.4
28,973 - GFF764 0.49 -1.6
29,069 - GFF764 0.55 +0.9
29,185 + GFF764 0.61 -1.0
29,185 + GFF764 0.61 -2.7
29,185 + GFF764 0.61 +0.4
29,185 + GFF764 0.61 +0.6
29,185 + GFF764 0.61 +1.2
29,185 + GFF764 0.61 -3.0
29,185 + GFF764 0.61 -0.3
29,186 - GFF764 0.62 -3.3
29,186 - GFF764 0.62 +0.6
29,186 - GFF764 0.62 -0.6
29,186 - GFF764 0.62 -0.2
29,186 - GFF764 0.62 +0.4
29,533 + GFF764 0.82 -1.0
29,533 + GFF764 0.82 -2.4
29,533 + GFF764 0.82 -1.4
29,533 + GFF764 0.82 -0.6
29,534 - GFF764 0.82 +1.0
29,534 - GFF764 0.82 -0.4
29,534 - GFF764 0.82 -1.5
29,534 - GFF764 0.82 +1.3
29,534 - GFF764 0.82 +0.5
29,534 - GFF764 0.82 -1.7
29,536 + GFF764 0.82 -2.4
29,537 - GFF764 0.82 -2.4
29,537 - GFF764 0.82 +0.4
29,551 + GFF764 0.83 +1.4
29,635 + GFF764 0.88 +0.2
29,897 - -0.4
29,949 - -2.0
30,042 + -0.4
30,061 + +0.4
30,061 + -0.1
30,061 + +3.0
30,061 + -2.0
30,061 + -1.0
30,061 + -0.4
30,062 - +1.6
30,062 - -3.7
30,062 - -1.0
30,062 - +0.0
30,062 - +0.3
30,062 - +0.5
30,062 - +0.3
30,097 + GFF765 0.20 -0.0
30,098 - GFF765 0.21 -0.6
30,224 + GFF765 0.68 +1.2
30,247 + GFF765 0.76 +0.6
30,539 + -1.1
30,572 + +0.7
30,573 - +1.2
30,625 - +1.6
30,671 + -1.0
30,671 + -0.4
30,671 + +0.6
30,672 - +1.4
30,672 - -1.3
30,738 + GFF766 0.13 +1.0
30,738 + GFF766 0.13 +0.4
30,764 + GFF766 0.14 -2.0
30,765 - GFF766 0.14 -2.1
30,765 - GFF766 0.14 +0.4
30,765 - GFF766 0.14 -3.1
30,765 - GFF766 0.14 -2.0
30,770 + GFF766 0.14 -2.8
30,770 + GFF766 0.14 -2.4

Or see this region's nucleotide sequence