Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF72 and GFF73 are separated by 2 nucleotides GFF73 and GFF74 are separated by 72 nucleotides GFF74 and GFF75 are separated by 106 nucleotides
GFF72 - D-threo-3-hydroxyaspartate ammonia-lyase (EC 4.3.1.-), at 89,244 to 90,377
GFF72
GFF73 - Probable haloacid dehalogenase, at 90,380 to 91,039
GFF73
GFF74 - Transcriptional regulator, LysR family, at 91,112 to 92,041
GFF74
GFF75 - ABC transporter, substrate-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 92,148 to 93,164
GFF75
Position (kb) 91
92
93 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 90.134 kb on - strand, within GFF72 at 90.495 kb on + strand, within GFF73 at 90.496 kb on - strand, within GFF73 at 90.496 kb on - strand, within GFF73 at 90.534 kb on + strand, within GFF73 at 90.535 kb on - strand, within GFF73 at 90.621 kb on + strand, within GFF73 at 90.621 kb on + strand, within GFF73 at 90.873 kb on + strand, within GFF73 at 90.873 kb on + strand, within GFF73 at 90.873 kb on + strand, within GFF73 at 90.873 kb on + strand, within GFF73 at 90.873 kb on + strand, within GFF73 at 90.874 kb on - strand, within GFF73 at 90.874 kb on - strand, within GFF73 at 90.874 kb on - strand, within GFF73 at 90.874 kb on - strand, within GFF73 at 90.889 kb on - strand, within GFF73 at 90.903 kb on + strand, within GFF73 at 91.052 kb on + strand at 91.052 kb on + strand at 91.052 kb on + strand at 91.053 kb on - strand at 91.053 kb on - strand at 91.099 kb on + strand at 91.428 kb on - strand, within GFF74 at 91.619 kb on + strand, within GFF74 at 91.620 kb on - strand, within GFF74 at 91.620 kb on - strand, within GFF74 at 91.799 kb on + strand, within GFF74 at 91.799 kb on + strand, within GFF74 at 91.799 kb on + strand, within GFF74 at 91.800 kb on - strand, within GFF74 at 91.800 kb on - strand, within GFF74 at 91.800 kb on - strand, within GFF74 at 91.800 kb on - strand, within GFF74 at 91.978 kb on + strand at 91.978 kb on + strand at 92.048 kb on + strand at 92.064 kb on + strand at 92.622 kb on + strand, within GFF75 at 92.622 kb on + strand, within GFF75 at 92.623 kb on - strand, within GFF75 at 92.623 kb on - strand, within GFF75 at 92.925 kb on + strand, within GFF75 at 92.926 kb on - strand, within GFF75 at 92.926 kb on - strand, within GFF75 at 92.926 kb on - strand, within GFF75 at 92.926 kb on - strand, within GFF75 at 92.926 kb on - strand, within GFF75 at 92.970 kb on + strand, within GFF75 at 92.970 kb on + strand, within GFF75 at 92.971 kb on - strand, within GFF75 at 93.024 kb on + strand, within GFF75 at 93.024 kb on + strand, within GFF75 at 93.024 kb on + strand, within GFF75 at 93.025 kb on - strand, within GFF75 at 93.025 kb on - strand, within GFF75
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 90,134 - GFF72 0.78 +1.4 90,495 + GFF73 0.17 +0.3 90,496 - GFF73 0.18 -1.6 90,496 - GFF73 0.18 +0.6 90,534 + GFF73 0.23 -3.6 90,535 - GFF73 0.23 +0.9 90,621 + GFF73 0.37 -4.0 90,621 + GFF73 0.37 +0.9 90,873 + GFF73 0.75 +0.1 90,873 + GFF73 0.75 -0.6 90,873 + GFF73 0.75 -0.2 90,873 + GFF73 0.75 +1.1 90,873 + GFF73 0.75 +1.0 90,874 - GFF73 0.75 -2.7 90,874 - GFF73 0.75 +0.4 90,874 - GFF73 0.75 -1.7 90,874 - GFF73 0.75 +0.3 90,889 - GFF73 0.77 +0.2 90,903 + GFF73 0.79 +0.4 91,052 + -2.4 91,052 + -1.4 91,052 + +0.4 91,053 - -0.0 91,053 - -0.6 91,099 + +1.4 91,428 - GFF74 0.34 +0.8 91,619 + GFF74 0.55 -0.0 91,620 - GFF74 0.55 -0.2 91,620 - GFF74 0.55 +0.3 91,799 + GFF74 0.74 -2.6 91,799 + GFF74 0.74 -2.4 91,799 + GFF74 0.74 +0.8 91,800 - GFF74 0.74 -1.5 91,800 - GFF74 0.74 -2.7 91,800 - GFF74 0.74 -2.5 91,800 - GFF74 0.74 -1.6 91,978 + +0.5 91,978 + +0.8 92,048 + -0.6 92,064 + -0.4 92,622 + GFF75 0.47 +0.5 92,622 + GFF75 0.47 -1.4 92,623 - GFF75 0.47 +0.4 92,623 - GFF75 0.47 -3.1 92,925 + GFF75 0.76 -0.2 92,926 - GFF75 0.76 -2.7 92,926 - GFF75 0.76 +0.6 92,926 - GFF75 0.76 -0.2 92,926 - GFF75 0.76 -3.1 92,926 - GFF75 0.76 +0.7 92,970 + GFF75 0.81 -1.6 92,970 + GFF75 0.81 -0.0 92,971 - GFF75 0.81 +0.2 93,024 + GFF75 0.86 -0.1 93,024 + GFF75 0.86 +2.2 93,024 + GFF75 0.86 -3.0 93,025 - GFF75 0.86 -1.2 93,025 - GFF75 0.86 -0.2
Or see this region's nucleotide sequence