Strain Fitness in Variovorax sp. SCN45 around GFF7379

Experiment: Community=guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=guar; Passage=4
8,198	+		GFF7377	0.76	-1.6
8,198	+		GFF7377	0.76	-1.5
8,199	-		GFF7377	0.76	-1.2
8,199	-		GFF7377	0.76	+0.8
8,199	-		GFF7377	0.76	-0.7
8,199	-		GFF7377	0.76	-0.2
8,199	-		GFF7377	0.76	-1.3
8,199	-		GFF7377	0.76	-2.3
8,474	+				-1.3
8,475	-				-1.6
8,475	-				-0.4
8,475	-				-1.2
8,554	+				-2.7
8,554	+				-2.4
8,554	+				-0.6
8,554	+				-1.7
8,554	+				-1.4
8,554	+				-0.9
8,555	-				-1.2
8,555	-				-2.4
8,555	-				+1.2
8,638	+		GFF7378	0.20	+2.5
8,740	+		GFF7378	0.46	+2.0
9,111	+		GFF7379	0.14	-2.0
9,111	+		GFF7379	0.14	-2.3
9,111	+		GFF7379	0.14	-3.1
9,111	+		GFF7379	0.14	-3.8
9,111	+		GFF7379	0.14	-0.6
9,111	+		GFF7379	0.14	-2.5
9,111	+		GFF7379	0.14	+0.3
9,111	+		GFF7379	0.14	-2.1
9,111	+		GFF7379	0.14	-1.1
9,112	-		GFF7379	0.14	-0.2
9,112	-		GFF7379	0.14	-0.2
9,112	-		GFF7379	0.14	-3.0
9,112	-		GFF7379	0.14	-1.8
9,112	-		GFF7379	0.14	-0.4
9,112	-		GFF7379	0.14	-3.1
9,112	-		GFF7379	0.14	-4.1
9,112	-		GFF7379	0.14	-1.2
9,112	-		GFF7379	0.14	-1.2
9,112	-		GFF7379	0.14	+0.3
9,112	-		GFF7379	0.14	-0.1
9,316	-		GFF7379	0.32	-1.1
9,316	-		GFF7379	0.32	-1.2
9,316	-		GFF7379	0.32	-0.2
9,316	-		GFF7379	0.32	+0.3
9,316	-		GFF7379	0.32	-0.0
9,316	-		GFF7379	0.32	-1.1
9,316	-		GFF7379	0.32	-4.1
9,316	-		GFF7379	0.32	-0.0
9,390	+		GFF7379	0.38	-1.3
9,390	+		GFF7379	0.38	-3.7
9,390	+		GFF7379	0.38	-2.2
9,390	+		GFF7379	0.38	-1.5
9,390	+		GFF7379	0.38	-1.0
9,390	+		GFF7379	0.38	-0.9
9,390	+		GFF7379	0.38	+1.6
9,391	-		GFF7379	0.38	-0.2
9,391	-		GFF7379	0.38	-3.6
9,391	-		GFF7379	0.38	+0.3
9,391	-		GFF7379	0.38	+1.0
9,391	-		GFF7379	0.38	-0.4
9,391	-		GFF7379	0.38	-4.6
9,391	-		GFF7379	0.38	-0.2
9,391	-		GFF7379	0.38	-1.7
9,528	+		GFF7379	0.50	-3.0
9,529	-		GFF7379	0.50	-3.6
9,529	-		GFF7379	0.50	-2.3
9,529	-		GFF7379	0.50	-2.6
9,735	+		GFF7379	0.68	-0.2
9,736	-		GFF7379	0.68	-0.2
9,736	-		GFF7379	0.68	-1.4
9,736	-		GFF7379	0.68	-2.9
9,891	+		GFF7379	0.81	+1.0
9,891	+		GFF7379	0.81	-0.2
9,891	+		GFF7379	0.81	-2.9
9,891	+		GFF7379	0.81	-2.5
9,891	+		GFF7379	0.81	-2.5
9,891	+		GFF7379	0.81	+1.6
9,891	+		GFF7379	0.81	+0.3
9,891	+		GFF7379	0.81	-0.6
9,891	+		GFF7379	0.81	+0.6
9,891	+		GFF7379	0.81	-1.8
9,892	-		GFF7379	0.81	-1.7
9,892	-		GFF7379	0.81	-2.7
9,892	-		GFF7379	0.81	-1.1
9,892	-		GFF7379	0.81	-2.6
9,892	-		GFF7379	0.81	-4.6
9,892	-		GFF7379	0.81	-2.4
9,892	-		GFF7379	0.81	-0.4
9,892	-		GFF7379	0.81	-1.2
9,892	-		GFF7379	0.81	+2.6
9,892	-		GFF7379	0.81	-3.3
9,892	-		GFF7379	0.81	-0.2
9,892	-		GFF7379	0.81	+0.3
9,892	-		GFF7379	0.81	-1.4
9,975	+		GFF7379	0.89	-0.7
9,976	-		GFF7379	0.89	-2.1
9,976	-		GFF7379	0.89	-0.4
9,976	-		GFF7379	0.89	-1.1
10,149	+				+1.0
10,149	+				-2.0
10,149	+				-0.6
10,149	+				-3.5
10,149	+				+1.0
10,149	+				-1.5
10,149	+				-2.5
10,149	+				-1.9
10,149	+				-1.5
10,149	+				-2.5
10,149	+				-3.9
10,149	+				-1.0
10,149	+				-1.2
10,149	+				-2.5
10,149	+				+0.9
10,150	-				-2.9
10,150	-				-1.4
10,150	-				+2.1
10,150	-				-3.6
10,150	-				-2.4
10,150	-				+1.0
10,150	-				-1.1
10,150	-				-1.5
10,150	-				-2.6
10,150	-				+0.6
10,150	-				+0.6
10,150	-				-1.0
10,150	-				-1.6
10,150	-				-2.9
10,150	-				-3.0
10,150	-				-3.0
10,150	-				-0.7
10,150	-				-0.4
10,150	-				+0.6
10,150	-				-1.2
10,364	+		GFF7380	0.20	-2.5
10,364	+		GFF7380	0.20	-2.2
10,364	+		GFF7380	0.20	-2.5
10,364	+		GFF7380	0.20	-2.8
10,364	+		GFF7380	0.20	-0.7
10,365	-		GFF7380	0.21	-2.5
10,365	-		GFF7380	0.21	+0.3
10,403	+		GFF7380	0.24	-1.8
10,403	+		GFF7380	0.24	-2.5
10,403	+		GFF7380	0.24	-1.2
10,403	+		GFF7380	0.24	-1.8
10,403	+		GFF7380	0.24	-2.9
10,403	+		GFF7380	0.24	-2.5
10,403	+		GFF7380	0.24	-2.2
10,404	-		GFF7380	0.24	-1.1
10,404	-		GFF7380	0.24	-0.0
10,431	-		GFF7380	0.26	+1.0
10,431	-		GFF7380	0.26	-0.2
10,431	-		GFF7380	0.26	-4.3
10,431	-		GFF7380	0.26	-3.8
10,431	-		GFF7380	0.26	-1.3
10,442	+		GFF7380	0.27	-1.0
10,442	+		GFF7380	0.27	-2.4
10,442	+		GFF7380	0.27	-3.1
10,442	+		GFF7380	0.27	-3.4
10,442	+		GFF7380	0.27	-2.3
10,443	-		GFF7380	0.28	-1.7
10,443	-		GFF7380	0.28	-2.6
10,590	-		GFF7380	0.41	-3.4
10,865	+		GFF7380	0.65	-2.7
10,866	-		GFF7380	0.65	-1.1
10,866	-		GFF7380	0.65	+1.0
11,028	+		GFF7380	0.80	+0.6
11,028	+		GFF7380	0.80	-2.1
11,029	-		GFF7380	0.80	+0.3
11,029	-		GFF7380	0.80	-2.4
11,029	-		GFF7380	0.80	+1.0
11,029	-		GFF7380	0.80	-2.5
11,066	+		GFF7380	0.83	-3.3
11,067	-		GFF7380	0.83	-1.9
11,067	-		GFF7380	0.83	-1.5
11,067	-		GFF7380	0.83	-0.2
11,067	-		GFF7380	0.83	-1.2
11,067	-		GFF7380	0.83	-1.0
11,067	-		GFF7380	0.83	-0.0