Strain Fitness in Variovorax sp. SCN45 around GFF7331

Experiment: Community=guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=guar; Passage=4
879	-				+1.6
906	+				-0.4
1,069	-				-2.0
1,217	-		GFF7330	0.32	-1.2
1,254	-		GFF7330	0.40	-0.3
1,298	-		GFF7330	0.49	+0.5
1,316	+		GFF7330	0.52	-2.8
1,544	-				-0.4
1,590	-				+2.2
1,705	+				-1.7
1,705	+				-0.6
1,705	+				-0.8
1,706	-				+0.7
1,712	+				-1.0
1,763	+				+0.8
1,763	+				+0.2
1,820	+		GFF7331	0.12	-2.0
1,820	+		GFF7331	0.12	-0.8
1,821	-		GFF7331	0.12	+0.8
1,871	+		GFF7331	0.22	-1.7
1,871	+		GFF7331	0.22	-1.3
2,107	+		GFF7331	0.68	-0.8
2,108	-		GFF7331	0.68	-2.4
2,252	+				+0.1
2,252	+				-0.5
2,253	-				-0.0
2,253	-				+3.8
2,253	-				+2.8
2,253	-				-3.2
2,284	-				-0.3
2,343	-				-4.6
2,343	-				-0.5
2,403	-				-1.0
2,429	+				-1.0
2,429	+				-0.1
2,429	+				-0.4
2,481	+				-0.8
2,634	+		GFF7332	0.23	+0.3
2,663	+		GFF7332	0.27	+0.9
2,664	-		GFF7332	0.27	-0.3
2,866	-		GFF7332	0.56	-1.3
2,919	-		GFF7332	0.64	+0.5
3,092	+		GFF7332	0.89	-1.2
3,120	+				-0.2
3,208	+				+1.2
3,209	-				-0.9
3,209	-				+1.3
3,230	+				+0.8