Strain Fitness in Variovorax sp. SCN45 around GFF725

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF724 and GFF725 are separated by 96 nucleotidesGFF725 and GFF726 are separated by 128 nucleotides GFF724 - Fe2+-dicitrate sensor, membrane component, at 780,630 to 781,622 GFF724 GFF725 - TonB-dependent siderophore receptor, at 781,719 to 784,223 GFF725 GFF726 - Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) periplasmic (secreted in GramPositives), at 784,352 to 785,749 GFF726 Position (kb) 781 782 783 784 785Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 780.927 kb on + strand, within GFF724at 780.928 kb on - strand, within GFF724at 781.410 kb on + strand, within GFF724at 781.410 kb on + strand, within GFF724at 781.410 kb on + strand, within GFF724at 781.411 kb on - strand, within GFF724at 781.411 kb on - strand, within GFF724at 781.411 kb on - strand, within GFF724at 781.411 kb on - strand, within GFF724at 781.539 kb on + strandat 781.539 kb on + strandat 781.540 kb on - strandat 781.540 kb on - strandat 781.597 kb on - strandat 782.004 kb on + strand, within GFF725at 782.005 kb on - strand, within GFF725at 782.080 kb on - strand, within GFF725at 782.208 kb on + strand, within GFF725at 782.208 kb on + strand, within GFF725at 782.208 kb on + strand, within GFF725at 782.208 kb on + strand, within GFF725at 782.209 kb on - strand, within GFF725at 782.209 kb on - strand, within GFF725at 782.358 kb on + strand, within GFF725at 782.358 kb on + strand, within GFF725at 782.358 kb on + strand, within GFF725at 782.358 kb on + strand, within GFF725at 782.358 kb on + strand, within GFF725at 782.358 kb on + strand, within GFF725at 782.358 kb on + strand, within GFF725at 782.358 kb on + strand, within GFF725at 782.359 kb on - strand, within GFF725at 782.359 kb on - strand, within GFF725at 782.382 kb on + strand, within GFF725at 782.382 kb on + strand, within GFF725at 782.382 kb on + strand, within GFF725at 782.382 kb on + strand, within GFF725at 782.382 kb on + strand, within GFF725at 782.382 kb on + strand, within GFF725at 782.382 kb on + strand, within GFF725at 782.382 kb on + strand, within GFF725at 782.382 kb on + strand, within GFF725at 782.383 kb on - strand, within GFF725at 782.383 kb on - strand, within GFF725at 782.383 kb on - strand, within GFF725at 782.383 kb on - strand, within GFF725at 782.388 kb on + strand, within GFF725at 782.388 kb on + strand, within GFF725at 782.388 kb on + strand, within GFF725at 782.388 kb on + strand, within GFF725at 782.415 kb on + strand, within GFF725at 782.415 kb on + strand, within GFF725at 782.415 kb on + strand, within GFF725at 782.416 kb on - strand, within GFF725at 782.445 kb on + strand, within GFF725at 782.445 kb on + strand, within GFF725at 782.445 kb on + strand, within GFF725at 782.445 kb on + strand, within GFF725at 782.446 kb on - strand, within GFF725at 782.631 kb on + strand, within GFF725at 782.631 kb on + strand, within GFF725at 782.632 kb on - strand, within GFF725at 782.632 kb on - strand, within GFF725at 782.718 kb on + strand, within GFF725at 782.719 kb on - strand, within GFF725at 782.719 kb on - strand, within GFF725at 782.724 kb on + strand, within GFF725at 782.724 kb on + strand, within GFF725at 782.725 kb on - strand, within GFF725at 782.725 kb on - strand, within GFF725at 782.725 kb on - strand, within GFF725at 782.758 kb on - strand, within GFF725at 782.758 kb on - strand, within GFF725at 782.758 kb on - strand, within GFF725at 782.758 kb on - strand, within GFF725at 782.773 kb on - strand, within GFF725at 783.004 kb on - strand, within GFF725at 783.004 kb on - strand, within GFF725at 783.030 kb on + strand, within GFF725at 783.030 kb on + strand, within GFF725at 783.030 kb on + strand, within GFF725at 783.030 kb on + strand, within GFF725at 783.030 kb on + strand, within GFF725at 783.030 kb on + strand, within GFF725at 783.030 kb on + strand, within GFF725at 783.031 kb on - strand, within GFF725at 783.031 kb on - strand, within GFF725at 783.031 kb on - strand, within GFF725at 783.031 kb on - strand, within GFF725at 783.031 kb on - strand, within GFF725at 783.031 kb on - strand, within GFF725at 783.031 kb on - strand, within GFF725at 783.031 kb on - strand, within GFF725at 783.031 kb on - strand, within GFF725at 783.031 kb on - strand, within GFF725at 783.031 kb on - strand, within GFF725at 783.036 kb on + strand, within GFF725at 783.036 kb on + strand, within GFF725at 783.036 kb on + strand, within GFF725at 783.036 kb on + strand, within GFF725at 783.036 kb on + strand, within GFF725at 783.037 kb on - strand, within GFF725at 783.037 kb on - strand, within GFF725at 783.037 kb on - strand, within GFF725at 783.037 kb on - strand, within GFF725at 783.358 kb on - strand, within GFF725at 783.358 kb on - strand, within GFF725at 783.423 kb on + strand, within GFF725at 783.423 kb on + strand, within GFF725at 783.423 kb on + strand, within GFF725at 783.423 kb on + strand, within GFF725at 783.423 kb on + strand, within GFF725at 783.424 kb on - strand, within GFF725at 783.462 kb on + strand, within GFF725at 783.462 kb on + strand, within GFF725at 783.463 kb on - strand, within GFF725at 783.463 kb on - strand, within GFF725at 783.463 kb on - strand, within GFF725at 783.463 kb on - strand, within GFF725at 783.463 kb on - strand, within GFF725at 783.501 kb on + strand, within GFF725at 783.517 kb on - strand, within GFF725at 783.543 kb on + strand, within GFF725at 783.543 kb on + strand, within GFF725at 783.627 kb on + strand, within GFF725at 783.627 kb on + strand, within GFF725at 783.751 kb on - strand, within GFF725at 783.751 kb on - strand, within GFF725at 783.756 kb on + strand, within GFF725at 783.756 kb on + strand, within GFF725at 783.756 kb on + strand, within GFF725at 783.756 kb on + strand, within GFF725at 783.756 kb on + strand, within GFF725at 783.756 kb on + strand, within GFF725at 783.756 kb on + strand, within GFF725at 783.756 kb on + strand, within GFF725at 783.756 kb on + strand, within GFF725at 783.757 kb on - strand, within GFF725at 783.757 kb on - strand, within GFF725at 783.757 kb on - strand, within GFF725at 783.757 kb on - strand, within GFF725at 783.757 kb on - strand, within GFF725at 783.757 kb on - strand, within GFF725at 783.843 kb on + strand, within GFF725at 783.910 kb on - strand, within GFF725at 783.910 kb on - strand, within GFF725at 783.910 kb on - strand, within GFF725at 783.910 kb on - strand, within GFF725at 784.050 kb on + strandat 784.050 kb on + strandat 784.051 kb on - strandat 784.051 kb on - strandat 784.078 kb on - strandat 784.137 kb on + strandat 784.137 kb on + strandat 784.137 kb on + strandat 784.137 kb on + strandat 784.137 kb on + strandat 784.137 kb on + strandat 784.138 kb on - strandat 784.138 kb on - strandat 784.138 kb on - strandat 784.138 kb on - strandat 784.140 kb on + strandat 784.141 kb on - strandat 784.269 kb on + strandat 784.269 kb on + strandat 784.269 kb on + strandat 784.269 kb on + strandat 784.270 kb on - strandat 784.435 kb on - strandat 784.435 kb on - strandat 784.435 kb on - strandat 784.793 kb on + strand, within GFF726at 784.934 kb on + strand, within GFF726at 784.934 kb on + strand, within GFF726at 784.934 kb on + strand, within GFF726at 784.934 kb on + strand, within GFF726at 784.934 kb on + strand, within GFF726at 784.934 kb on + strand, within GFF726at 784.934 kb on + strand, within GFF726

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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780,927 + GFF724 0.30 +1.5
780,928 - GFF724 0.30 +0.4
781,410 + GFF724 0.79 -0.2
781,410 + GFF724 0.79 -2.5
781,410 + GFF724 0.79 +1.6
781,411 - GFF724 0.79 -1.5
781,411 - GFF724 0.79 +0.2
781,411 - GFF724 0.79 -1.7
781,411 - GFF724 0.79 -2.5
781,539 + +1.3
781,539 + -1.0
781,540 - +1.4
781,540 - -2.7
781,597 - +1.2
782,004 + GFF725 0.11 +0.6
782,005 - GFF725 0.11 -1.7
782,080 - GFF725 0.14 +0.5
782,208 + GFF725 0.20 -0.3
782,208 + GFF725 0.20 -1.7
782,208 + GFF725 0.20 -1.0
782,208 + GFF725 0.20 -2.1
782,209 - GFF725 0.20 +2.7
782,209 - GFF725 0.20 +1.1
782,358 + GFF725 0.26 -0.6
782,358 + GFF725 0.26 -1.3
782,358 + GFF725 0.26 -4.4
782,358 + GFF725 0.26 -1.5
782,358 + GFF725 0.26 -0.5
782,358 + GFF725 0.26 +0.7
782,358 + GFF725 0.26 +0.7
782,358 + GFF725 0.26 -1.5
782,359 - GFF725 0.26 -1.0
782,359 - GFF725 0.26 +0.1
782,382 + GFF725 0.26 +0.5
782,382 + GFF725 0.26 -2.3
782,382 + GFF725 0.26 -0.4
782,382 + GFF725 0.26 -0.0
782,382 + GFF725 0.26 -1.2
782,382 + GFF725 0.26 -2.5
782,382 + GFF725 0.26 -0.4
782,382 + GFF725 0.26 -3.0
782,382 + GFF725 0.26 +2.8
782,383 - GFF725 0.27 +1.9
782,383 - GFF725 0.27 -2.1
782,383 - GFF725 0.27 -2.6
782,383 - GFF725 0.27 +1.9
782,388 + GFF725 0.27 +1.1
782,388 + GFF725 0.27 -1.5
782,388 + GFF725 0.27 -3.7
782,388 + GFF725 0.27 -1.5
782,415 + GFF725 0.28 -0.8
782,415 + GFF725 0.28 +0.5
782,415 + GFF725 0.28 -0.5
782,416 - GFF725 0.28 -2.0
782,445 + GFF725 0.29 +0.2
782,445 + GFF725 0.29 +0.4
782,445 + GFF725 0.29 -3.4
782,445 + GFF725 0.29 +0.2
782,446 - GFF725 0.29 +1.2
782,631 + GFF725 0.36 -0.4
782,631 + GFF725 0.36 -0.8
782,632 - GFF725 0.36 -0.7
782,632 - GFF725 0.36 -0.5
782,718 + GFF725 0.40 +0.5
782,719 - GFF725 0.40 -2.2
782,719 - GFF725 0.40 +0.0
782,724 + GFF725 0.40 -1.3
782,724 + GFF725 0.40 -1.5
782,725 - GFF725 0.40 -1.3
782,725 - GFF725 0.40 -0.8
782,725 - GFF725 0.40 +0.0
782,758 - GFF725 0.41 +0.5
782,758 - GFF725 0.41 +0.3
782,758 - GFF725 0.41 +0.5
782,758 - GFF725 0.41 -0.5
782,773 - GFF725 0.42 -1.5
783,004 - GFF725 0.51 +1.0
783,004 - GFF725 0.51 +0.5
783,030 + GFF725 0.52 -0.9
783,030 + GFF725 0.52 -1.5
783,030 + GFF725 0.52 +0.5
783,030 + GFF725 0.52 -1.3
783,030 + GFF725 0.52 +0.9
783,030 + GFF725 0.52 -0.2
783,030 + GFF725 0.52 -1.5
783,031 - GFF725 0.52 -2.5
783,031 - GFF725 0.52 +0.2
783,031 - GFF725 0.52 -0.8
783,031 - GFF725 0.52 +1.0
783,031 - GFF725 0.52 -1.8
783,031 - GFF725 0.52 -0.1
783,031 - GFF725 0.52 -3.7
783,031 - GFF725 0.52 -2.5
783,031 - GFF725 0.52 -1.5
783,031 - GFF725 0.52 +3.1
783,031 - GFF725 0.52 -0.5
783,036 + GFF725 0.53 -2.2
783,036 + GFF725 0.53 +0.8
783,036 + GFF725 0.53 +0.2
783,036 + GFF725 0.53 -1.5
783,036 + GFF725 0.53 -0.5
783,037 - GFF725 0.53 +0.1
783,037 - GFF725 0.53 +1.6
783,037 - GFF725 0.53 -2.5
783,037 - GFF725 0.53 +1.2
783,358 - GFF725 0.65 +1.3
783,358 - GFF725 0.65 +0.5
783,423 + GFF725 0.68 +1.3
783,423 + GFF725 0.68 -3.5
783,423 + GFF725 0.68 -0.4
783,423 + GFF725 0.68 -2.3
783,423 + GFF725 0.68 -2.4
783,424 - GFF725 0.68 +0.9
783,462 + GFF725 0.70 -1.0
783,462 + GFF725 0.70 +0.6
783,463 - GFF725 0.70 -1.5
783,463 - GFF725 0.70 -1.3
783,463 - GFF725 0.70 -0.8
783,463 - GFF725 0.70 +1.5
783,463 - GFF725 0.70 -1.5
783,501 + GFF725 0.71 -2.1
783,517 - GFF725 0.72 -0.8
783,543 + GFF725 0.73 -1.7
783,543 + GFF725 0.73 +0.3
783,627 + GFF725 0.76 -1.8
783,627 + GFF725 0.76 -0.1
783,751 - GFF725 0.81 +0.5
783,751 - GFF725 0.81 +2.2
783,756 + GFF725 0.81 -2.3
783,756 + GFF725 0.81 +0.8
783,756 + GFF725 0.81 -4.0
783,756 + GFF725 0.81 -0.5
783,756 + GFF725 0.81 -2.4
783,756 + GFF725 0.81 -0.4
783,756 + GFF725 0.81 -3.5
783,756 + GFF725 0.81 -0.5
783,756 + GFF725 0.81 +0.1
783,757 - GFF725 0.81 +0.5
783,757 - GFF725 0.81 +0.5
783,757 - GFF725 0.81 +0.0
783,757 - GFF725 0.81 -2.4
783,757 - GFF725 0.81 -2.3
783,757 - GFF725 0.81 +0.3
783,843 + GFF725 0.85 -2.1
783,910 - GFF725 0.87 +0.8
783,910 - GFF725 0.87 +1.5
783,910 - GFF725 0.87 +0.6
783,910 - GFF725 0.87 -0.7
784,050 + -1.3
784,050 + -0.3
784,051 - +0.4
784,051 - +0.2
784,078 - -4.5
784,137 + +0.0
784,137 + -3.5
784,137 + -3.2
784,137 + -2.3
784,137 + -1.8
784,137 + +1.9
784,138 - +0.9
784,138 - -0.5
784,138 - -3.4
784,138 - -0.4
784,140 + -1.5
784,141 - -1.3
784,269 + -2.9
784,269 + -2.3
784,269 + -2.2
784,269 + -1.3
784,270 - -0.8
784,435 - -0.6
784,435 - -1.5
784,435 - -1.6
784,793 + GFF726 0.32 +0.8
784,934 + GFF726 0.42 +3.8
784,934 + GFF726 0.42 -0.4
784,934 + GFF726 0.42 -0.8
784,934 + GFF726 0.42 +0.7
784,934 + GFF726 0.42 -3.9
784,934 + GFF726 0.42 -0.8
784,934 + GFF726 0.42 -1.3

Or see this region's nucleotide sequence