Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7240 and GFF7241 are separated by 156 nucleotides GFF7241 and GFF7242 are separated by 16 nucleotides GFF7242 and GFF7243 are separated by 66 nucleotides
GFF7240 - Polyhydroxyalkanoic acid synthase, at 20,975 to 22,636
GFF7240
GFF7241 - no description, at 22,793 to 23,269
GFF7241
GFF7242 - hypothetical protein, at 23,286 to 23,660
GFF7242
GFF7243 - HtrA protease/chaperone protein, at 23,727 to 25,010
GFF7243
Position (kb) 23
24 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 22.401 kb on + strand, within GFF7240 at 22.401 kb on + strand, within GFF7240 at 22.402 kb on - strand, within GFF7240 at 22.895 kb on + strand, within GFF7241 at 22.895 kb on + strand, within GFF7241 at 22.895 kb on + strand, within GFF7241 at 22.896 kb on - strand, within GFF7241 at 23.094 kb on - strand, within GFF7241 at 23.401 kb on + strand, within GFF7242 at 23.771 kb on - strand at 24.346 kb on + strand, within GFF7243 at 24.346 kb on + strand, within GFF7243 at 24.433 kb on + strand, within GFF7243 at 24.433 kb on + strand, within GFF7243 at 24.433 kb on + strand, within GFF7243 at 24.433 kb on + strand, within GFF7243 at 24.434 kb on - strand, within GFF7243 at 24.434 kb on - strand, within GFF7243 at 24.451 kb on + strand, within GFF7243 at 24.451 kb on + strand, within GFF7243 at 24.452 kb on - strand, within GFF7243
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 22,401 + GFF7240 0.86 -2.8 22,401 + GFF7240 0.86 -0.6 22,402 - GFF7240 0.86 -1.6 22,895 + GFF7241 0.21 -2.7 22,895 + GFF7241 0.21 -0.1 22,895 + GFF7241 0.21 +0.3 22,896 - GFF7241 0.22 +2.1 23,094 - GFF7241 0.63 -1.6 23,401 + GFF7242 0.31 -4.0 23,771 - +1.1 24,346 + GFF7243 0.48 -1.8 24,346 + GFF7243 0.48 -2.9 24,433 + GFF7243 0.55 -1.7 24,433 + GFF7243 0.55 -0.4 24,433 + GFF7243 0.55 +0.3 24,433 + GFF7243 0.55 -1.5 24,434 - GFF7243 0.55 +0.4 24,434 - GFF7243 0.55 -2.8 24,451 + GFF7243 0.56 +0.7 24,451 + GFF7243 0.56 +0.4 24,452 - GFF7243 0.56 +0.3
Or see this region's nucleotide sequence