Strain Fitness in Variovorax sp. SCN45 around GFF7182

Experiment: Community=guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=guar; Passage=4
58	+				+0.4
74	+				+0.5
108	+				-3.1
109	-				-2.7
113	-				+2.6
194	+				+1.6
207	+				-1.0
256	+		GFF7182	0.20	+0.5
350	-		GFF7182	0.40	-1.2
416	+		GFF7182	0.55	-1.7
417	-		GFF7182	0.55	-1.5
420	+		GFF7182	0.55	-0.2
421	-		GFF7182	0.56	+2.2
421	-		GFF7182	0.56	-0.7
529	-		GFF7182	0.79	-1.5
529	-		GFF7182	0.79	-2.4
903	-				-3.5
911	+				-1.3
911	+				+1.0
940	-		GFF7183	0.12	-0.1
1,027	-		GFF7183	0.25	+1.0
1,036	-		GFF7183	0.26	-0.5
1,077	+		GFF7183	0.32	-1.4
1,078	-		GFF7183	0.32	+1.3
1,078	-		GFF7183	0.32	-3.1
1,086	+		GFF7183	0.34	+0.2
1,221	+		GFF7183	0.54	+1.2
1,524	-				+0.3
1,524	-				+0.8