Strain Fitness in Variovorax sp. SCN45 around GFF7119

Experiment: Community=guar; Passage=4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF7117 and GFF7118 overlap by 4 nucleotidesGFF7118 and GFF7119 are separated by 6 nucleotidesGFF7119 and GFF7120 are separated by 1 nucleotides GFF7117 - 2-hydroxymuconic semialdehyde hydrolase (EC 3.7.1.9), at 35,409 to 36,239 GFF7117 GFF7118 - 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262), at 36,236 to 37,177 GFF7118 GFF7119 - Ortho-halobenzoate 1,2-dioxygenase beta-ISP protein OhbA, at 37,184 to 37,660 GFF7119 GFF7120 - Ortho-halobenzoate 1,2-dioxygenase alpha-ISP protein OhbB, at 37,662 to 38,906 GFF7120 Position (kb) 37 38Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 36.186 kb on + strandat 36.186 kb on + strandat 36.186 kb on + strandat 36.186 kb on + strandat 36.187 kb on - strandat 36.230 kb on + strandat 36.230 kb on + strandat 36.230 kb on + strandat 36.230 kb on + strandat 36.230 kb on + strandat 36.230 kb on + strandat 36.231 kb on - strandat 36.231 kb on - strandat 36.231 kb on - strandat 36.447 kb on + strand, within GFF7118at 36.447 kb on + strand, within GFF7118at 36.447 kb on + strand, within GFF7118at 36.448 kb on - strand, within GFF7118at 36.448 kb on - strand, within GFF7118at 36.448 kb on - strand, within GFF7118at 36.921 kb on - strand, within GFF7118at 36.924 kb on + strand, within GFF7118at 36.924 kb on + strand, within GFF7118at 36.924 kb on + strand, within GFF7118at 36.925 kb on - strand, within GFF7118at 36.925 kb on - strand, within GFF7118at 36.925 kb on - strand, within GFF7118at 36.925 kb on - strand, within GFF7118at 36.925 kb on - strand, within GFF7118at 36.925 kb on - strand, within GFF7118at 36.925 kb on - strand, within GFF7118at 36.925 kb on - strand, within GFF7118at 36.925 kb on - strand, within GFF7118at 36.972 kb on + strand, within GFF7118at 36.972 kb on + strand, within GFF7118at 36.972 kb on + strand, within GFF7118at 36.972 kb on + strand, within GFF7118at 36.973 kb on - strand, within GFF7118at 36.973 kb on - strand, within GFF7118at 37.032 kb on + strand, within GFF7118at 37.185 kb on + strandat 37.185 kb on + strandat 37.290 kb on + strand, within GFF7119at 37.290 kb on + strand, within GFF7119at 37.290 kb on + strand, within GFF7119at 37.290 kb on + strand, within GFF7119at 37.290 kb on + strand, within GFF7119at 37.290 kb on + strand, within GFF7119at 37.291 kb on - strand, within GFF7119at 37.291 kb on - strand, within GFF7119at 37.291 kb on - strand, within GFF7119at 37.431 kb on + strand, within GFF7119at 37.431 kb on + strand, within GFF7119at 37.431 kb on + strand, within GFF7119at 37.431 kb on + strand, within GFF7119at 37.431 kb on + strand, within GFF7119at 37.431 kb on + strand, within GFF7119at 37.431 kb on + strand, within GFF7119at 37.431 kb on + strand, within GFF7119at 37.432 kb on - strand, within GFF7119at 37.432 kb on - strand, within GFF7119at 37.432 kb on - strand, within GFF7119at 37.432 kb on - strand, within GFF7119at 37.432 kb on - strand, within GFF7119at 37.432 kb on - strand, within GFF7119at 37.432 kb on - strand, within GFF7119at 37.432 kb on - strand, within GFF7119at 37.491 kb on + strand, within GFF7119at 37.491 kb on + strand, within GFF7119at 37.491 kb on + strand, within GFF7119at 37.491 kb on + strand, within GFF7119at 37.491 kb on + strand, within GFF7119at 37.491 kb on + strand, within GFF7119at 37.491 kb on + strand, within GFF7119at 37.491 kb on + strand, within GFF7119at 37.491 kb on + strand, within GFF7119at 37.491 kb on + strand, within GFF7119at 37.491 kb on + strand, within GFF7119at 37.491 kb on + strand, within GFF7119at 37.491 kb on + strand, within GFF7119at 37.491 kb on + strand, within GFF7119at 37.491 kb on + strand, within GFF7119at 37.491 kb on + strand, within GFF7119at 37.491 kb on + strand, within GFF7119at 37.491 kb on + strand, within GFF7119at 37.492 kb on - strand, within GFF7119at 37.492 kb on - strand, within GFF7119at 37.492 kb on - strand, within GFF7119at 37.492 kb on - strand, within GFF7119at 37.492 kb on - strand, within GFF7119at 37.492 kb on - strand, within GFF7119at 37.492 kb on - strand, within GFF7119at 37.492 kb on - strand, within GFF7119at 37.492 kb on - strand, within GFF7119at 37.492 kb on - strand, within GFF7119at 37.492 kb on - strand, within GFF7119at 37.492 kb on - strand, within GFF7119at 37.492 kb on - strand, within GFF7119at 37.492 kb on - strand, within GFF7119at 37.492 kb on - strand, within GFF7119at 37.492 kb on - strand, within GFF7119at 37.492 kb on - strand, within GFF7119at 37.492 kb on - strand, within GFF7119at 37.492 kb on - strand, within GFF7119at 37.492 kb on - strand, within GFF7119at 37.492 kb on - strand, within GFF7119at 37.545 kb on + strand, within GFF7119at 37.546 kb on - strand, within GFF7119at 37.546 kb on - strand, within GFF7119at 37.567 kb on - strand, within GFF7119at 37.567 kb on - strand, within GFF7119at 37.611 kb on + strand, within GFF7119at 37.611 kb on + strand, within GFF7119at 37.611 kb on + strand, within GFF7119at 37.638 kb on + strandat 37.638 kb on + strandat 37.639 kb on - strandat 37.675 kb on + strandat 37.675 kb on + strandat 37.675 kb on + strandat 37.675 kb on + strandat 37.675 kb on + strandat 37.675 kb on + strandat 37.675 kb on + strandat 37.675 kb on + strandat 37.675 kb on + strandat 37.675 kb on + strandat 37.676 kb on - strandat 37.676 kb on - strandat 37.676 kb on - strandat 37.676 kb on - strandat 37.676 kb on - strandat 37.676 kb on - strandat 37.676 kb on - strandat 37.676 kb on - strandat 37.676 kb on - strandat 37.676 kb on - strandat 37.676 kb on - strandat 37.684 kb on + strandat 37.685 kb on - strandat 37.685 kb on - strandat 37.840 kb on + strand, within GFF7120at 37.840 kb on + strand, within GFF7120at 37.840 kb on + strand, within GFF7120at 37.840 kb on + strand, within GFF7120at 37.841 kb on - strand, within GFF7120at 37.918 kb on + strand, within GFF7120at 37.918 kb on + strand, within GFF7120at 37.918 kb on + strand, within GFF7120at 37.918 kb on + strand, within GFF7120at 37.918 kb on + strand, within GFF7120at 37.918 kb on + strand, within GFF7120at 37.919 kb on - strand, within GFF7120at 37.919 kb on - strand, within GFF7120at 37.919 kb on - strand, within GFF7120at 37.919 kb on - strand, within GFF7120at 38.092 kb on - strand, within GFF7120at 38.119 kb on + strand, within GFF7120at 38.119 kb on + strand, within GFF7120at 38.119 kb on + strand, within GFF7120at 38.119 kb on + strand, within GFF7120at 38.120 kb on - strand, within GFF7120at 38.120 kb on - strand, within GFF7120at 38.120 kb on - strand, within GFF7120at 38.269 kb on + strand, within GFF7120at 38.269 kb on + strand, within GFF7120at 38.269 kb on + strand, within GFF7120at 38.269 kb on + strand, within GFF7120at 38.269 kb on + strand, within GFF7120at 38.270 kb on - strand, within GFF7120at 38.270 kb on - strand, within GFF7120at 38.270 kb on - strand, within GFF7120at 38.270 kb on - strand, within GFF7120at 38.270 kb on - strand, within GFF7120at 38.270 kb on - strand, within GFF7120at 38.270 kb on - strand, within GFF7120at 38.294 kb on - strand, within GFF7120at 38.294 kb on - strand, within GFF7120at 38.294 kb on - strand, within GFF7120at 38.294 kb on - strand, within GFF7120at 38.395 kb on + strand, within GFF7120at 38.395 kb on + strand, within GFF7120at 38.395 kb on + strand, within GFF7120at 38.396 kb on - strand, within GFF7120at 38.396 kb on - strand, within GFF7120at 38.396 kb on - strand, within GFF7120at 38.396 kb on - strand, within GFF7120at 38.396 kb on - strand, within GFF7120at 38.396 kb on - strand, within GFF7120at 38.396 kb on - strand, within GFF7120at 38.396 kb on - strand, within GFF7120at 38.440 kb on - strand, within GFF7120at 38.440 kb on - strand, within GFF7120at 38.440 kb on - strand, within GFF7120at 38.569 kb on + strand, within GFF7120at 38.569 kb on + strand, within GFF7120at 38.570 kb on - strand, within GFF7120at 38.585 kb on - strand, within GFF7120at 38.585 kb on - strand, within GFF7120at 38.585 kb on - strand, within GFF7120

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
remove
36,186 + -0.6
36,186 + -1.3
36,186 + -3.1
36,186 + -0.8
36,187 - -2.6
36,230 + -1.1
36,230 + +0.1
36,230 + -1.8
36,230 + +0.6
36,230 + +0.6
36,230 + -1.6
36,231 - -0.6
36,231 - -0.4
36,231 - -1.8
36,447 + GFF7118 0.22 -1.5
36,447 + GFF7118 0.22 +1.4
36,447 + GFF7118 0.22 -1.2
36,448 - GFF7118 0.23 -1.2
36,448 - GFF7118 0.23 -2.7
36,448 - GFF7118 0.23 -0.6
36,921 - GFF7118 0.73 +0.6
36,924 + GFF7118 0.73 -0.9
36,924 + GFF7118 0.73 -1.3
36,924 + GFF7118 0.73 +1.3
36,925 - GFF7118 0.73 -0.8
36,925 - GFF7118 0.73 -0.2
36,925 - GFF7118 0.73 -3.1
36,925 - GFF7118 0.73 -2.1
36,925 - GFF7118 0.73 -1.9
36,925 - GFF7118 0.73 -0.7
36,925 - GFF7118 0.73 -0.8
36,925 - GFF7118 0.73 +0.1
36,925 - GFF7118 0.73 +0.6
36,972 + GFF7118 0.78 -0.1
36,972 + GFF7118 0.78 -1.6
36,972 + GFF7118 0.78 -4.3
36,972 + GFF7118 0.78 -0.9
36,973 - GFF7118 0.78 -0.2
36,973 - GFF7118 0.78 +1.7
37,032 + GFF7118 0.85 +2.2
37,185 + +0.7
37,185 + +1.9
37,290 + GFF7119 0.22 -4.0
37,290 + GFF7119 0.22 -1.3
37,290 + GFF7119 0.22 +2.9
37,290 + GFF7119 0.22 -1.2
37,290 + GFF7119 0.22 +0.4
37,290 + GFF7119 0.22 -1.7
37,291 - GFF7119 0.22 +0.2
37,291 - GFF7119 0.22 -1.0
37,291 - GFF7119 0.22 -2.6
37,431 + GFF7119 0.52 -0.7
37,431 + GFF7119 0.52 -1.4
37,431 + GFF7119 0.52 +0.3
37,431 + GFF7119 0.52 -0.9
37,431 + GFF7119 0.52 -1.7
37,431 + GFF7119 0.52 -0.5
37,431 + GFF7119 0.52 +0.4
37,431 + GFF7119 0.52 +1.4
37,432 - GFF7119 0.52 -0.6
37,432 - GFF7119 0.52 +0.7
37,432 - GFF7119 0.52 -2.9
37,432 - GFF7119 0.52 -0.6
37,432 - GFF7119 0.52 +0.7
37,432 - GFF7119 0.52 -1.2
37,432 - GFF7119 0.52 +0.6
37,432 - GFF7119 0.52 +0.3
37,491 + GFF7119 0.64 -0.5
37,491 + GFF7119 0.64 +1.0
37,491 + GFF7119 0.64 +1.2
37,491 + GFF7119 0.64 -3.6
37,491 + GFF7119 0.64 -2.1
37,491 + GFF7119 0.64 +2.4
37,491 + GFF7119 0.64 +0.4
37,491 + GFF7119 0.64 -0.6
37,491 + GFF7119 0.64 -2.5
37,491 + GFF7119 0.64 -1.3
37,491 + GFF7119 0.64 -1.8
37,491 + GFF7119 0.64 -0.2
37,491 + GFF7119 0.64 -2.1
37,491 + GFF7119 0.64 -1.3
37,491 + GFF7119 0.64 +0.1
37,491 + GFF7119 0.64 -3.2
37,491 + GFF7119 0.64 +0.2
37,491 + GFF7119 0.64 +0.6
37,492 - GFF7119 0.65 -0.3
37,492 - GFF7119 0.65 -1.5
37,492 - GFF7119 0.65 +0.0
37,492 - GFF7119 0.65 +0.4
37,492 - GFF7119 0.65 +1.2
37,492 - GFF7119 0.65 +0.1
37,492 - GFF7119 0.65 +0.8
37,492 - GFF7119 0.65 -0.3
37,492 - GFF7119 0.65 +1.1
37,492 - GFF7119 0.65 -2.6
37,492 - GFF7119 0.65 -1.2
37,492 - GFF7119 0.65 -0.8
37,492 - GFF7119 0.65 -0.9
37,492 - GFF7119 0.65 +2.2
37,492 - GFF7119 0.65 -0.4
37,492 - GFF7119 0.65 +1.6
37,492 - GFF7119 0.65 -1.3
37,492 - GFF7119 0.65 -2.1
37,492 - GFF7119 0.65 -0.6
37,492 - GFF7119 0.65 +0.6
37,492 - GFF7119 0.65 +0.2
37,545 + GFF7119 0.76 +2.5
37,546 - GFF7119 0.76 -2.1
37,546 - GFF7119 0.76 -0.1
37,567 - GFF7119 0.80 +0.7
37,567 - GFF7119 0.80 -2.7
37,611 + GFF7119 0.90 +0.8
37,611 + GFF7119 0.90 +2.8
37,611 + GFF7119 0.90 +0.4
37,638 + +0.7
37,638 + -2.9
37,639 - +1.0
37,675 + +2.2
37,675 + -2.5
37,675 + -0.8
37,675 + -2.9
37,675 + -3.1
37,675 + -2.9
37,675 + +1.3
37,675 + +0.6
37,675 + -0.5
37,675 + -2.3
37,676 - -1.2
37,676 - -1.2
37,676 - +1.4
37,676 - -1.2
37,676 - -2.0
37,676 - -0.3
37,676 - -1.2
37,676 - -1.8
37,676 - -1.1
37,676 - -0.3
37,676 - -0.5
37,684 + +1.3
37,685 - -0.4
37,685 - +0.5
37,840 + GFF7120 0.14 -0.6
37,840 + GFF7120 0.14 +1.3
37,840 + GFF7120 0.14 -3.5
37,840 + GFF7120 0.14 -0.3
37,841 - GFF7120 0.14 -0.9
37,918 + GFF7120 0.21 +0.4
37,918 + GFF7120 0.21 +2.1
37,918 + GFF7120 0.21 +1.4
37,918 + GFF7120 0.21 -1.7
37,918 + GFF7120 0.21 -0.3
37,918 + GFF7120 0.21 -0.8
37,919 - GFF7120 0.21 -0.2
37,919 - GFF7120 0.21 +0.8
37,919 - GFF7120 0.21 -3.1
37,919 - GFF7120 0.21 -3.8
38,092 - GFF7120 0.35 -0.6
38,119 + GFF7120 0.37 -2.9
38,119 + GFF7120 0.37 +0.0
38,119 + GFF7120 0.37 +3.0
38,119 + GFF7120 0.37 -1.8
38,120 - GFF7120 0.37 -1.8
38,120 - GFF7120 0.37 -2.3
38,120 - GFF7120 0.37 -0.9
38,269 + GFF7120 0.49 -2.3
38,269 + GFF7120 0.49 -0.9
38,269 + GFF7120 0.49 -0.7
38,269 + GFF7120 0.49 -1.1
38,269 + GFF7120 0.49 +0.7
38,270 - GFF7120 0.49 +0.2
38,270 - GFF7120 0.49 -0.3
38,270 - GFF7120 0.49 +2.2
38,270 - GFF7120 0.49 +1.2
38,270 - GFF7120 0.49 -3.9
38,270 - GFF7120 0.49 +0.2
38,270 - GFF7120 0.49 -0.1
38,294 - GFF7120 0.51 +1.1
38,294 - GFF7120 0.51 +0.6
38,294 - GFF7120 0.51 +2.2
38,294 - GFF7120 0.51 -0.6
38,395 + GFF7120 0.59 -2.4
38,395 + GFF7120 0.59 -0.3
38,395 + GFF7120 0.59 +0.6
38,396 - GFF7120 0.59 +4.1
38,396 - GFF7120 0.59 -0.2
38,396 - GFF7120 0.59 +0.2
38,396 - GFF7120 0.59 -0.9
38,396 - GFF7120 0.59 +0.8
38,396 - GFF7120 0.59 -1.2
38,396 - GFF7120 0.59 -3.1
38,396 - GFF7120 0.59 -1.3
38,440 - GFF7120 0.62 +1.3
38,440 - GFF7120 0.62 -0.6
38,440 - GFF7120 0.62 +2.5
38,569 + GFF7120 0.73 +0.2
38,569 + GFF7120 0.73 -1.5
38,570 - GFF7120 0.73 +1.3
38,585 - GFF7120 0.74 -0.2
38,585 - GFF7120 0.74 +0.9
38,585 - GFF7120 0.74 -2.6

Or see this region's nucleotide sequence