Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7001 and GFF7002 are separated by 52 nucleotides GFF7002 and GFF7003 are separated by 41 nucleotides GFF7003 and GFF7004 are separated by 19 nucleotides
GFF7001 - hypothetical protein, at 16,885 to 17,895
GFF7001
GFF7002 - Flagellar basal-body rod protein FlgG, at 17,948 to 18,736
GFF7002
GFF7003 - Flagellar basal-body rod protein FlgF, at 18,778 to 19,563
GFF7003
GFF7004 - Flagellar biosynthesis protein FlhA, at 19,583 to 21,694
GFF7004
Position (kb) 18
19
20 Strain fitness (log2 ratio) -2
-1
0
1
2 at 17.950 kb on - strand at 17.999 kb on + strand at 18.000 kb on - strand at 18.721 kb on - strand at 18.721 kb on - strand at 18.940 kb on + strand, within GFF7003 at 18.940 kb on + strand, within GFF7003 at 18.940 kb on + strand, within GFF7003 at 19.034 kb on - strand, within GFF7003 at 19.450 kb on + strand, within GFF7003 at 19.451 kb on - strand, within GFF7003 at 19.451 kb on - strand, within GFF7003 at 19.847 kb on + strand, within GFF7004 at 19.848 kb on - strand, within GFF7004 at 20.365 kb on + strand, within GFF7004 at 20.498 kb on + strand, within GFF7004 at 20.498 kb on + strand, within GFF7004 at 20.499 kb on - strand, within GFF7004
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 17,950 - -2.4 17,999 + +1.0 18,000 - +0.0 18,721 - -2.7 18,721 - -0.2 18,940 + GFF7003 0.21 +0.5 18,940 + GFF7003 0.21 -1.3 18,940 + GFF7003 0.21 +0.0 19,034 - GFF7003 0.33 +0.8 19,450 + GFF7003 0.85 +0.1 19,451 - GFF7003 0.86 -1.7 19,451 - GFF7003 0.86 +1.2 19,847 + GFF7004 0.12 -0.8 19,848 - GFF7004 0.13 -2.4 20,365 + GFF7004 0.37 -0.2 20,498 + GFF7004 0.43 +2.0 20,498 + GFF7004 0.43 -2.5 20,499 - GFF7004 0.43 -0.7
Or see this region's nucleotide sequence