Strain Fitness in Variovorax sp. SCN45 around GFF6990

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6988 and GFF6989 are separated by 55 nucleotidesGFF6989 and GFF6990 overlap by 1 nucleotidesGFF6990 and GFF6991 are separated by 434 nucleotidesGFF6991 and GFF6992 overlap by 4 nucleotides GFF6988 - Flagellar hook protein FlgE, at 6,495 to 7,703 GFF6988 GFF6989 - Flagellar basal-body rod modification protein FlgD, at 7,759 to 8,160 GFF6989 GFF6990 - hypothetical protein, at 8,160 to 8,591 GFF6990 GFF6991 - no description, at 9,026 to 9,541 GFF6991 GFF6992 - Flagellum-specific ATP synthase FliI, at 9,538 to 10,929 GFF6992 Position (kb) 8 9Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 7.379 kb on - strand, within GFF6988at 7.379 kb on - strand, within GFF6988at 8.060 kb on + strand, within GFF6989at 8.060 kb on + strand, within GFF6989at 8.299 kb on + strand, within GFF6990at 9.492 kb on - strandat 9.492 kb on - strandat 9.492 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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7,379 - GFF6988 0.73 -0.3
7,379 - GFF6988 0.73 -1.6
8,060 + GFF6989 0.75 +1.7
8,060 + GFF6989 0.75 +1.0
8,299 + GFF6990 0.32 -4.2
9,492 - -1.1
9,492 - +1.3
9,492 - -2.2

Or see this region's nucleotide sequence