Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6894 and GFF6895 are separated by 5 nucleotides GFF6895 and GFF6896 are separated by 21 nucleotides GFF6896 and GFF6897 are separated by 13 nucleotides
GFF6894 - FIG00454405: hypothetical protein, at 27,031 to 27,723
GFF6894
GFF6895 - L-lysine permease, at 27,729 to 28,361
GFF6895
GFF6896 - pyridoxal-phosphate dependent enzyme family protein, at 28,383 to 29,354
GFF6896
GFF6897 - Creatinine amidohydrolase (EC 3.5.2.10), at 29,368 to 30,198
GFF6897
Position (kb) 28
29
30 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 27.390 kb on + strand, within GFF6894 at 27.390 kb on + strand, within GFF6894 at 27.390 kb on + strand, within GFF6894 at 27.390 kb on + strand, within GFF6894 at 27.390 kb on + strand, within GFF6894 at 27.391 kb on - strand, within GFF6894 at 27.391 kb on - strand, within GFF6894 at 27.487 kb on + strand, within GFF6894 at 27.487 kb on + strand, within GFF6894 at 27.488 kb on - strand, within GFF6894 at 27.488 kb on - strand, within GFF6894 at 27.488 kb on - strand, within GFF6894 at 27.488 kb on - strand, within GFF6894 at 27.807 kb on + strand, within GFF6895 at 27.807 kb on + strand, within GFF6895 at 27.807 kb on + strand, within GFF6895 at 27.807 kb on + strand, within GFF6895 at 27.807 kb on + strand, within GFF6895 at 27.807 kb on + strand, within GFF6895 at 27.807 kb on + strand, within GFF6895 at 27.807 kb on + strand, within GFF6895 at 27.807 kb on + strand, within GFF6895 at 27.807 kb on + strand, within GFF6895 at 27.807 kb on + strand, within GFF6895 at 27.807 kb on + strand, within GFF6895 at 27.807 kb on + strand, within GFF6895 at 27.807 kb on + strand, within GFF6895 at 27.807 kb on + strand, within GFF6895 at 27.807 kb on + strand, within GFF6895 at 27.807 kb on + strand, within GFF6895 at 27.808 kb on - strand, within GFF6895 at 27.808 kb on - strand, within GFF6895 at 27.808 kb on - strand, within GFF6895 at 27.808 kb on - strand, within GFF6895 at 27.808 kb on - strand, within GFF6895 at 27.808 kb on - strand, within GFF6895 at 27.808 kb on - strand, within GFF6895 at 27.808 kb on - strand, within GFF6895 at 27.808 kb on - strand, within GFF6895 at 27.808 kb on - strand, within GFF6895 at 27.808 kb on - strand, within GFF6895 at 27.808 kb on - strand, within GFF6895 at 27.808 kb on - strand, within GFF6895 at 27.808 kb on - strand, within GFF6895 at 27.808 kb on - strand, within GFF6895 at 27.808 kb on - strand, within GFF6895 at 27.975 kb on + strand, within GFF6895 at 27.975 kb on + strand, within GFF6895 at 27.975 kb on + strand, within GFF6895 at 27.975 kb on + strand, within GFF6895 at 27.976 kb on - strand, within GFF6895 at 27.976 kb on - strand, within GFF6895 at 28.119 kb on + strand, within GFF6895 at 28.119 kb on + strand, within GFF6895 at 28.119 kb on + strand, within GFF6895 at 28.119 kb on + strand, within GFF6895 at 28.119 kb on + strand, within GFF6895 at 28.119 kb on + strand, within GFF6895 at 28.119 kb on + strand, within GFF6895 at 28.119 kb on + strand, within GFF6895 at 28.119 kb on + strand, within GFF6895 at 28.119 kb on + strand, within GFF6895 at 28.120 kb on - strand, within GFF6895 at 28.120 kb on - strand, within GFF6895 at 28.120 kb on - strand, within GFF6895 at 28.120 kb on - strand, within GFF6895 at 28.120 kb on - strand, within GFF6895 at 28.120 kb on - strand, within GFF6895 at 28.299 kb on + strand at 28.299 kb on + strand at 28.299 kb on + strand at 28.299 kb on + strand at 28.300 kb on - strand at 28.359 kb on + strand at 28.359 kb on + strand at 28.359 kb on + strand at 28.359 kb on + strand at 28.359 kb on + strand at 28.359 kb on + strand at 28.359 kb on + strand at 28.360 kb on - strand at 28.360 kb on - strand at 28.360 kb on - strand at 28.360 kb on - strand at 28.360 kb on - strand at 28.360 kb on - strand at 28.360 kb on - strand at 28.360 kb on - strand at 28.360 kb on - strand at 28.360 kb on - strand at 28.360 kb on - strand at 28.360 kb on - strand at 28.360 kb on - strand at 28.360 kb on - strand at 28.455 kb on + strand at 28.455 kb on + strand at 28.455 kb on + strand at 28.455 kb on + strand at 28.456 kb on - strand at 28.456 kb on - strand at 28.456 kb on - strand at 28.456 kb on - strand at 28.456 kb on - strand at 28.557 kb on + strand, within GFF6896 at 28.558 kb on + strand, within GFF6896 at 28.558 kb on - strand, within GFF6896 at 28.860 kb on + strand, within GFF6896 at 28.860 kb on + strand, within GFF6896 at 28.860 kb on + strand, within GFF6896 at 28.860 kb on + strand, within GFF6896 at 28.860 kb on + strand, within GFF6896 at 28.861 kb on - strand, within GFF6896 at 28.861 kb on - strand, within GFF6896 at 28.861 kb on - strand, within GFF6896 at 28.861 kb on - strand, within GFF6896 at 28.861 kb on - strand, within GFF6896 at 28.861 kb on - strand, within GFF6896 at 29.369 kb on + strand at 29.370 kb on - strand at 29.370 kb on - strand at 29.370 kb on - strand at 29.370 kb on - strand at 30.209 kb on + strand at 30.209 kb on + strand at 30.209 kb on + strand at 30.209 kb on + strand at 30.210 kb on - strand at 30.210 kb on - strand at 30.210 kb on - strand at 30.285 kb on + strand at 30.286 kb on - strand at 30.286 kb on - strand at 30.286 kb on - strand at 30.295 kb on + strand at 30.295 kb on + strand at 30.295 kb on + strand at 30.296 kb on - strand at 30.296 kb on - strand at 30.296 kb on - strand at 30.296 kb on - strand at 30.296 kb on - strand at 30.296 kb on - strand at 30.296 kb on - strand at 30.296 kb on - strand at 30.298 kb on - strand at 30.298 kb on - strand at 30.315 kb on + strand at 30.315 kb on + strand at 30.315 kb on + strand at 30.315 kb on + strand at 30.315 kb on + strand at 30.316 kb on - strand at 30.316 kb on - strand at 30.338 kb on - strand at 30.339 kb on + strand at 30.339 kb on + strand at 30.339 kb on + strand at 30.339 kb on + strand at 30.340 kb on - strand at 30.340 kb on - strand at 30.340 kb on - strand at 30.340 kb on - strand at 30.340 kb on - strand at 30.340 kb on - strand at 30.340 kb on - strand at 30.340 kb on - strand at 30.343 kb on + strand at 30.343 kb on + strand at 30.343 kb on + strand at 30.344 kb on - strand at 30.344 kb on - strand at 30.344 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 27,390 + GFF6894 0.52 -2.4 27,390 + GFF6894 0.52 -0.7 27,390 + GFF6894 0.52 -2.3 27,390 + GFF6894 0.52 +1.1 27,390 + GFF6894 0.52 -0.5 27,391 - GFF6894 0.52 -1.3 27,391 - GFF6894 0.52 -2.5 27,487 + GFF6894 0.66 -0.9 27,487 + GFF6894 0.66 -0.0 27,488 - GFF6894 0.66 -0.1 27,488 - GFF6894 0.66 -1.0 27,488 - GFF6894 0.66 -1.5 27,488 - GFF6894 0.66 +0.9 27,807 + GFF6895 0.12 +0.5 27,807 + GFF6895 0.12 -1.1 27,807 + GFF6895 0.12 +1.1 27,807 + GFF6895 0.12 -2.0 27,807 + GFF6895 0.12 +0.7 27,807 + GFF6895 0.12 +1.0 27,807 + GFF6895 0.12 -1.4 27,807 + GFF6895 0.12 +1.9 27,807 + GFF6895 0.12 +0.1 27,807 + GFF6895 0.12 -2.7 27,807 + GFF6895 0.12 +0.8 27,807 + GFF6895 0.12 +1.3 27,807 + GFF6895 0.12 +1.8 27,807 + GFF6895 0.12 -0.1 27,807 + GFF6895 0.12 -0.7 27,807 + GFF6895 0.12 -1.4 27,807 + GFF6895 0.12 -0.4 27,808 - GFF6895 0.12 -0.0 27,808 - GFF6895 0.12 +0.3 27,808 - GFF6895 0.12 +1.1 27,808 - GFF6895 0.12 -1.9 27,808 - GFF6895 0.12 -2.7 27,808 - GFF6895 0.12 +0.3 27,808 - GFF6895 0.12 -0.6 27,808 - GFF6895 0.12 -2.9 27,808 - GFF6895 0.12 +0.1 27,808 - GFF6895 0.12 +0.6 27,808 - GFF6895 0.12 -0.5 27,808 - GFF6895 0.12 -1.4 27,808 - GFF6895 0.12 +1.9 27,808 - GFF6895 0.12 -0.9 27,808 - GFF6895 0.12 -0.9 27,808 - GFF6895 0.12 -2.1 27,975 + GFF6895 0.39 +0.0 27,975 + GFF6895 0.39 -3.1 27,975 + GFF6895 0.39 +0.3 27,975 + GFF6895 0.39 +0.9 27,976 - GFF6895 0.39 +1.4 27,976 - GFF6895 0.39 -2.6 28,119 + GFF6895 0.62 -2.6 28,119 + GFF6895 0.62 +0.9 28,119 + GFF6895 0.62 -0.7 28,119 + GFF6895 0.62 -0.4 28,119 + GFF6895 0.62 -1.0 28,119 + GFF6895 0.62 +0.6 28,119 + GFF6895 0.62 +0.4 28,119 + GFF6895 0.62 +1.5 28,119 + GFF6895 0.62 -1.1 28,119 + GFF6895 0.62 -2.6 28,120 - GFF6895 0.62 +2.1 28,120 - GFF6895 0.62 -1.8 28,120 - GFF6895 0.62 -1.1 28,120 - GFF6895 0.62 -1.8 28,120 - GFF6895 0.62 -0.2 28,120 - GFF6895 0.62 +0.1 28,299 + +0.3 28,299 + +1.0 28,299 + +0.2 28,299 + +2.1 28,300 - +1.0 28,359 + -0.5 28,359 + +1.4 28,359 + -0.1 28,359 + -1.0 28,359 + +0.8 28,359 + -0.8 28,359 + +0.1 28,360 - -1.4 28,360 - +2.2 28,360 - +1.1 28,360 - +0.3 28,360 - +1.4 28,360 - -0.7 28,360 - -0.6 28,360 - +0.2 28,360 - -1.3 28,360 - -0.6 28,360 - -3.5 28,360 - -2.7 28,360 - -1.7 28,360 - +0.3 28,455 + +1.1 28,455 + +1.1 28,455 + -1.9 28,455 + -1.8 28,456 - +1.1 28,456 - -1.0 28,456 - +0.5 28,456 - +3.7 28,456 - -2.6 28,557 + GFF6896 0.18 +0.9 28,558 + GFF6896 0.18 -1.0 28,558 - GFF6896 0.18 -3.1 28,860 + GFF6896 0.49 -0.7 28,860 + GFF6896 0.49 -0.7 28,860 + GFF6896 0.49 -2.0 28,860 + GFF6896 0.49 -4.0 28,860 + GFF6896 0.49 +1.1 28,861 - GFF6896 0.49 -0.1 28,861 - GFF6896 0.49 -1.3 28,861 - GFF6896 0.49 -0.9 28,861 - GFF6896 0.49 -3.8 28,861 - GFF6896 0.49 +0.7 28,861 - GFF6896 0.49 +0.8 29,369 + -3.7 29,370 - -0.5 29,370 - -0.1 29,370 - +1.1 29,370 - +0.8 30,209 + +2.1 30,209 + +2.1 30,209 + -0.5 30,209 + +2.1 30,210 - -0.8 30,210 - -1.5 30,210 - +0.4 30,285 + -1.5 30,286 - +0.8 30,286 - -2.3 30,286 - +1.0 30,295 + +2.1 30,295 + +2.1 30,295 + +2.1 30,296 - -1.1 30,296 - +2.5 30,296 - -1.6 30,296 - +0.2 30,296 - +0.7 30,296 - -0.9 30,296 - -1.3 30,296 - -1.3 30,298 - +1.3 30,298 - +0.1 30,315 + +1.1 30,315 + +2.1 30,315 + +2.1 30,315 + +2.1 30,315 + +2.1 30,316 - -1.4 30,316 - +0.3 30,338 - -2.3 30,339 + -0.7 30,339 + +1.1 30,339 + -2.0 30,339 + +2.1 30,340 - -2.2 30,340 - -1.4 30,340 - +2.6 30,340 - +1.7 30,340 - -0.6 30,340 - -2.9 30,340 - -1.1 30,340 - -0.7 30,343 + +2.1 30,343 + +1.1 30,343 + -0.9 30,344 - +0.0 30,344 - -2.6 30,344 - +0.1
Or see this region's nucleotide sequence