Strain Fitness in Variovorax sp. SCN45 around GFF6735

Experiment: Community=guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=guar; Passage=4
44,975	+		GFF6734	0.25	+0.2
44,976	-		GFF6734	0.25	+2.7
45,065	+		GFF6734	0.34	+0.7
45,065	+		GFF6734	0.34	-0.0
45,066	-		GFF6734	0.34	-2.1
45,083	+		GFF6734	0.36	+0.6
45,084	-		GFF6734	0.36	+0.8
45,242	+		GFF6734	0.53	-1.2
45,242	+		GFF6734	0.53	+0.3
45,510	-		GFF6734	0.81	-1.2
45,510	-		GFF6734	0.81	-2.4
45,702	+				-1.3
45,702	+				-1.4
45,703	-				+1.8
45,869	-				-0.4
45,884	+				-0.8
45,884	+				-0.4
45,884	+				+1.3
45,884	+				-1.6
45,885	-				+0.1
45,885	-				+0.0
45,885	-				-1.8
45,885	-				+0.8
45,958	-				-0.4
46,032	+				-0.4
46,033	-				-1.6
46,033	-				-0.7
46,033	-				-1.4
46,033	-				-2.3
46,033	-				-1.0
46,033	-				-1.8
46,070	+		GFF6735	0.11	-0.2
46,166	+		GFF6735	0.16	-0.5
46,325	-		GFF6735	0.25	+0.2
46,486	+		GFF6735	0.35	-1.1
46,487	-		GFF6735	0.35	-0.4
46,487	-		GFF6735	0.35	-1.8
46,505	+		GFF6735	0.36	-0.8
46,506	-		GFF6735	0.36	-0.0
46,506	-		GFF6735	0.36	-1.4
46,554	+		GFF6735	0.39	+0.7
46,555	-		GFF6735	0.39	+0.6
46,555	-		GFF6735	0.39	-3.0
46,588	-		GFF6735	0.40	+3.2
46,701	+		GFF6735	0.47	-3.0
46,701	+		GFF6735	0.47	-2.1
46,701	+		GFF6735	0.47	-0.2
46,702	-		GFF6735	0.47	-1.3
46,702	-		GFF6735	0.47	-1.3
46,959	-		GFF6735	0.62	-0.7
46,981	+		GFF6735	0.63	+0.1
46,981	+		GFF6735	0.63	-0.3
46,981	+		GFF6735	0.63	-1.0
47,004	+		GFF6735	0.64	-2.4
47,005	-		GFF6735	0.64	-3.2
47,019	+		GFF6735	0.65	+0.8
47,020	-		GFF6735	0.65	+1.0
47,060	-		GFF6735	0.67	-1.6
47,060	-		GFF6735	0.67	+0.6
47,060	-		GFF6735	0.67	+1.5
47,060	-		GFF6735	0.67	+0.3
47,071	+		GFF6735	0.68	+1.1
47,071	+		GFF6735	0.68	-0.7
47,071	+		GFF6735	0.68	+1.4
47,071	+		GFF6735	0.68	-1.5
47,071	+		GFF6735	0.68	+0.9
47,071	+		GFF6735	0.68	-1.8
47,071	+		GFF6735	0.68	-2.4
47,072	-		GFF6735	0.68	-0.7
47,072	-		GFF6735	0.68	-1.6
47,072	-		GFF6735	0.68	-2.1
47,072	-		GFF6735	0.68	+1.3
47,073	+		GFF6735	0.68	+1.3
47,074	-		GFF6735	0.68	+0.8
47,074	-		GFF6735	0.68	+0.9
47,074	-		GFF6735	0.68	-0.1
47,171	+		GFF6735	0.74	-2.2
47,171	+		GFF6735	0.74	+1.3
47,172	-		GFF6735	0.74	-1.4
47,237	-		GFF6735	0.78	+0.2
47,349	-		GFF6735	0.84	+1.1
47,434	+		GFF6735	0.89	+2.1
47,455	+				-2.3
47,456	-				-2.0
47,456	-				-1.8
47,456	-				+0.3
47,456	-				+1.0
47,456	-				-0.6
47,515	+				-1.2
47,554	+				-0.6
47,555	-				-1.4
47,555	-				-0.1
47,628	+				+0.6
47,628	+				-1.6
47,629	-				-3.6
47,629	-				-2.6
47,629	-				-0.4
47,670	+				-2.3
47,718	+				-1.0
47,718	+				+1.0
47,718	+				+1.1
47,718	+				-0.6
47,719	-				-2.4
47,719	-				-2.2
47,719	-				+0.3
47,719	-				-0.2
47,757	+				-1.5
47,757	+				-0.3
47,757	+				+0.2
47,757	+				+2.0
47,757	+				+3.6
47,758	-				-1.4
47,758	-				+0.6
47,758	-				+3.2
47,758	-				-1.6
47,758	-				+0.2
47,859	+		GFF6736	0.11	+2.3
47,927	+		GFF6736	0.15	+0.6
47,928	-		GFF6736	0.15	-1.2
48,078	+		GFF6736	0.24	-0.2
48,252	+		GFF6736	0.35	-1.0
48,442	-		GFF6736	0.46	-2.3