Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6490 and GFF6491 are separated by 80 nucleotides GFF6491 and GFF6492 are separated by 22 nucleotides GFF6492 and GFF6493 are separated by 519 nucleotides GFF6493 and GFF6494 are separated by 83 nucleotides
GFF6490 - Uncharacterized conserved protein YfiP, contains DTW domain, at 67,853 to 68,545
GFF6490
GFF6491 - SAM-dependent methyltransferase, at 68,626 to 69,315
GFF6491
GFF6492 - no description, at 69,338 to 69,676
GFF6492
GFF6493 - Ribosomal-protein-S5p-alanine acetyltransferase, at 70,196 to 70,549
GFF6493
GFF6494 - protein of unknown function DUF1232, at 70,633 to 71,025
GFF6494
Position (kb) 69
70 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 68.474 kb on + strand, within GFF6490 at 68.666 kb on + strand at 68.667 kb on - strand at 68.813 kb on + strand, within GFF6491 at 69.005 kb on + strand, within GFF6491 at 69.005 kb on + strand, within GFF6491 at 69.005 kb on + strand, within GFF6491 at 69.005 kb on + strand, within GFF6491 at 69.006 kb on - strand, within GFF6491 at 69.006 kb on - strand, within GFF6491 at 69.006 kb on - strand, within GFF6491 at 69.006 kb on - strand, within GFF6491 at 69.006 kb on - strand, within GFF6491 at 69.006 kb on - strand, within GFF6491 at 69.006 kb on - strand, within GFF6491 at 69.825 kb on - strand at 69.825 kb on - strand at 69.927 kb on + strand at 69.927 kb on + strand at 69.928 kb on - strand at 69.928 kb on - strand at 70.062 kb on - strand at 70.062 kb on - strand at 70.062 kb on - strand at 70.178 kb on + strand at 70.179 kb on - strand at 70.179 kb on - strand at 70.271 kb on - strand, within GFF6493 at 70.271 kb on - strand, within GFF6493 at 70.271 kb on - strand, within GFF6493 at 70.299 kb on - strand, within GFF6493 at 70.307 kb on + strand, within GFF6493 at 70.310 kb on + strand, within GFF6493 at 70.310 kb on + strand, within GFF6493 at 70.310 kb on + strand, within GFF6493 at 70.310 kb on + strand, within GFF6493 at 70.310 kb on + strand, within GFF6493 at 70.311 kb on - strand, within GFF6493 at 70.311 kb on - strand, within GFF6493 at 70.478 kb on + strand, within GFF6493 at 70.479 kb on - strand, within GFF6493 at 70.479 kb on - strand, within GFF6493 at 70.479 kb on - strand, within GFF6493 at 70.479 kb on - strand, within GFF6493 at 70.479 kb on - strand, within GFF6493 at 70.490 kb on + strand, within GFF6493 at 70.490 kb on + strand, within GFF6493 at 70.491 kb on - strand, within GFF6493 at 70.491 kb on - strand, within GFF6493 at 70.491 kb on - strand, within GFF6493 at 70.547 kb on + strand at 70.548 kb on - strand at 70.548 kb on - strand at 70.605 kb on + strand at 70.605 kb on + strand at 70.605 kb on + strand at 70.605 kb on + strand at 70.605 kb on + strand at 70.605 kb on + strand at 70.605 kb on + strand at 70.605 kb on + strand at 70.606 kb on - strand at 70.606 kb on - strand at 70.606 kb on - strand at 70.606 kb on - strand at 70.606 kb on - strand at 70.606 kb on - strand at 70.606 kb on - strand at 70.606 kb on - strand at 70.606 kb on - strand at 70.606 kb on - strand at 70.606 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 68,474 + GFF6490 0.90 -0.3 68,666 + +2.6 68,667 - +0.6 68,813 + GFF6491 0.27 -1.1 69,005 + GFF6491 0.55 -2.4 69,005 + GFF6491 0.55 -0.6 69,005 + GFF6491 0.55 +0.1 69,005 + GFF6491 0.55 -4.4 69,006 - GFF6491 0.55 -0.7 69,006 - GFF6491 0.55 +1.6 69,006 - GFF6491 0.55 -1.1 69,006 - GFF6491 0.55 +1.4 69,006 - GFF6491 0.55 -1.3 69,006 - GFF6491 0.55 -1.3 69,006 - GFF6491 0.55 -0.6 69,825 - +0.4 69,825 - -1.1 69,927 + -1.7 69,927 + -1.7 69,928 - -1.9 69,928 - -1.1 70,062 - +1.1 70,062 - +0.1 70,062 - -0.5 70,178 + -0.3 70,179 - -1.0 70,179 - -1.2 70,271 - GFF6493 0.21 -1.7 70,271 - GFF6493 0.21 +0.1 70,271 - GFF6493 0.21 -0.6 70,299 - GFF6493 0.29 +0.9 70,307 + GFF6493 0.31 +0.4 70,310 + GFF6493 0.32 +0.4 70,310 + GFF6493 0.32 -0.4 70,310 + GFF6493 0.32 -1.9 70,310 + GFF6493 0.32 -2.1 70,310 + GFF6493 0.32 -0.9 70,311 - GFF6493 0.32 -1.1 70,311 - GFF6493 0.32 -0.4 70,478 + GFF6493 0.80 -1.1 70,479 - GFF6493 0.80 +0.9 70,479 - GFF6493 0.80 -1.6 70,479 - GFF6493 0.80 -1.0 70,479 - GFF6493 0.80 +0.5 70,479 - GFF6493 0.80 +1.0 70,490 + GFF6493 0.83 -0.9 70,490 + GFF6493 0.83 -1.0 70,491 - GFF6493 0.83 +2.6 70,491 - GFF6493 0.83 -0.0 70,491 - GFF6493 0.83 +0.0 70,547 + +0.6 70,548 - -2.2 70,548 - -1.3 70,605 + +2.1 70,605 + -1.3 70,605 + -0.9 70,605 + -1.3 70,605 + -0.0 70,605 + +0.3 70,605 + +0.7 70,605 + +0.1 70,606 - -1.4 70,606 - -0.6 70,606 - +0.1 70,606 - -0.9 70,606 - -1.2 70,606 - -2.6 70,606 - +0.4 70,606 - -0.2 70,606 - -1.3 70,606 - -1.3 70,606 - -2.7
Or see this region's nucleotide sequence