Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6475 and GFF6476 are separated by 305 nucleotides GFF6476 and GFF6477 are separated by 63 nucleotides GFF6477 and GFF6478 are separated by 54 nucleotides
GFF6475 - hypothetical protein, at 51,238 to 51,783
GFF6475
GFF6476 - Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10), at 52,089 to 53,261
GFF6476
GFF6477 - Glycine cleavage system H protein, at 53,325 to 53,696
GFF6477
GFF6478 - Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2), at 53,751 to 56,660
GFF6478
Position (kb) 52
53
54 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 51.102 kb on + strand at 51.102 kb on + strand at 51.102 kb on + strand at 51.102 kb on + strand at 51.103 kb on - strand at 51.103 kb on - strand at 51.103 kb on - strand at 51.103 kb on - strand at 51.162 kb on - strand at 51.421 kb on + strand, within GFF6475 at 51.422 kb on - strand, within GFF6475 at 51.565 kb on + strand, within GFF6475 at 51.829 kb on + strand at 51.829 kb on + strand at 51.829 kb on + strand at 51.829 kb on + strand at 51.829 kb on + strand at 51.829 kb on + strand at 51.829 kb on + strand at 51.830 kb on - strand at 51.830 kb on - strand at 51.830 kb on - strand at 52.022 kb on + strand at 52.023 kb on - strand at 52.023 kb on - strand at 52.023 kb on - strand at 52.203 kb on + strand at 52.203 kb on + strand at 52.203 kb on + strand at 52.204 kb on - strand at 52.368 kb on + strand, within GFF6476 at 52.675 kb on - strand, within GFF6476 at 52.818 kb on + strand, within GFF6476 at 52.818 kb on + strand, within GFF6476 at 52.819 kb on - strand, within GFF6476 at 53.142 kb on + strand, within GFF6476 at 53.142 kb on + strand, within GFF6476 at 53.143 kb on - strand, within GFF6476 at 53.143 kb on - strand, within GFF6476 at 53.143 kb on - strand, within GFF6476 at 53.247 kb on + strand at 53.248 kb on - strand at 53.250 kb on + strand at 53.250 kb on + strand at 53.250 kb on + strand at 53.251 kb on - strand at 53.293 kb on + strand at 53.293 kb on + strand at 53.294 kb on - strand at 53.337 kb on + strand at 53.337 kb on + strand at 53.337 kb on + strand at 53.337 kb on + strand at 53.337 kb on + strand at 53.337 kb on + strand at 53.337 kb on + strand at 53.338 kb on - strand at 53.338 kb on - strand at 53.338 kb on - strand at 53.338 kb on - strand at 53.671 kb on - strand at 53.785 kb on + strand at 53.786 kb on - strand at 53.786 kb on - strand at 53.786 kb on - strand at 53.786 kb on - strand at 53.804 kb on - strand at 54.027 kb on + strand at 54.027 kb on + strand at 54.027 kb on + strand at 54.027 kb on + strand at 54.027 kb on + strand at 54.028 kb on - strand at 54.031 kb on - strand at 54.031 kb on - strand at 54.031 kb on - strand at 54.087 kb on + strand, within GFF6478 at 54.088 kb on - strand, within GFF6478 at 54.088 kb on - strand, within GFF6478 at 54.088 kb on - strand, within GFF6478 at 54.088 kb on - strand, within GFF6478 at 54.096 kb on + strand, within GFF6478 at 54.097 kb on - strand, within GFF6478 at 54.097 kb on - strand, within GFF6478 at 54.105 kb on + strand, within GFF6478
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 51,102 + +1.0 51,102 + +2.6 51,102 + -0.6 51,102 + +2.1 51,103 - +2.4 51,103 - -1.7 51,103 - +0.7 51,103 - -0.1 51,162 - -2.6 51,421 + GFF6475 0.34 +0.9 51,422 - GFF6475 0.34 -0.1 51,565 + GFF6475 0.60 -3.4 51,829 + +0.6 51,829 + +2.4 51,829 + -0.9 51,829 + -0.1 51,829 + -1.1 51,829 + -0.8 51,829 + -0.9 51,830 - -0.9 51,830 - -0.9 51,830 - -0.2 52,022 + +1.4 52,023 - -1.7 52,023 - -1.9 52,023 - -2.2 52,203 + +0.2 52,203 + -3.4 52,203 + -1.1 52,204 - -2.0 52,368 + GFF6476 0.24 -1.2 52,675 - GFF6476 0.50 +0.3 52,818 + GFF6476 0.62 +0.1 52,818 + GFF6476 0.62 -3.2 52,819 - GFF6476 0.62 -3.2 53,142 + GFF6476 0.90 -2.1 53,142 + GFF6476 0.90 -0.6 53,143 - GFF6476 0.90 -0.8 53,143 - GFF6476 0.90 -2.7 53,143 - GFF6476 0.90 -2.7 53,247 + -0.7 53,248 - +0.5 53,250 + -1.0 53,250 + -3.7 53,250 + -1.6 53,251 - -0.1 53,293 + -2.5 53,293 + -1.7 53,294 - -2.6 53,337 + -0.1 53,337 + -1.3 53,337 + +2.3 53,337 + -1.6 53,337 + -0.9 53,337 + -1.3 53,337 + -3.2 53,338 - -1.1 53,338 - +1.1 53,338 - +1.0 53,338 - -2.4 53,671 - -2.9 53,785 + +1.6 53,786 - -2.9 53,786 - +0.6 53,786 - -0.0 53,786 - -1.1 53,804 - -1.4 54,027 + -1.2 54,027 + -2.3 54,027 + -2.4 54,027 + -2.3 54,027 + +0.5 54,028 - -1.1 54,031 - +0.0 54,031 - +2.5 54,031 - -2.5 54,087 + GFF6478 0.12 +0.0 54,088 - GFF6478 0.12 -1.3 54,088 - GFF6478 0.12 +0.1 54,088 - GFF6478 0.12 -0.6 54,088 - GFF6478 0.12 -4.0 54,096 + GFF6478 0.12 -1.2 54,097 - GFF6478 0.12 +0.1 54,097 - GFF6478 0.12 -3.4 54,105 + GFF6478 0.12 +0.4
Or see this region's nucleotide sequence