Strain Fitness in Variovorax sp. SCN45 around GFF6470

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6468 and GFF6469 overlap by 4 nucleotidesGFF6469 and GFF6470 overlap by 4 nucleotidesGFF6470 and GFF6471 overlap by 13 nucleotidesGFF6471 and GFF6472 are separated by 91 nucleotides GFF6468 - TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein, at 45,262 to 46,230 GFF6468 GFF6469 - TRAP-type transport system, large permease component, predicted N-acetylneuraminate transporter, at 46,227 to 46,721 GFF6469 GFF6470 - TRAP-type C4-dicarboxylate transport system, large permease component, at 46,718 to 47,995 GFF6470 GFF6471 - Transcriptional regulator, AraC family, at 47,983 to 48,771 GFF6471 GFF6472 - membrane efflux protein, at 48,863 to 50,056 GFF6472 Position (kb) 46 47 48Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 45.790 kb on + strand, within GFF6468at 45.791 kb on - strand, within GFF6468at 45.791 kb on - strand, within GFF6468at 46.222 kb on + strandat 46.223 kb on - strandat 46.223 kb on - strandat 46.405 kb on + strand, within GFF6469at 46.405 kb on + strand, within GFF6469at 46.405 kb on + strand, within GFF6469at 46.405 kb on + strand, within GFF6469at 46.405 kb on + strand, within GFF6469at 46.405 kb on + strand, within GFF6469at 46.405 kb on + strand, within GFF6469at 46.405 kb on + strand, within GFF6469at 46.406 kb on - strand, within GFF6469at 46.406 kb on - strand, within GFF6469at 46.406 kb on - strand, within GFF6469at 46.406 kb on - strand, within GFF6469at 46.465 kb on - strand, within GFF6469at 46.563 kb on + strand, within GFF6469at 46.626 kb on + strand, within GFF6469at 46.626 kb on + strand, within GFF6469at 46.680 kb on + strandat 46.681 kb on - strandat 46.681 kb on - strandat 46.847 kb on + strand, within GFF6470at 46.899 kb on + strand, within GFF6470at 46.899 kb on + strand, within GFF6470at 46.899 kb on + strand, within GFF6470at 46.900 kb on - strand, within GFF6470at 46.900 kb on - strand, within GFF6470at 47.115 kb on - strand, within GFF6470at 47.134 kb on + strand, within GFF6470at 47.135 kb on - strand, within GFF6470at 47.135 kb on - strand, within GFF6470at 47.135 kb on - strand, within GFF6470at 47.183 kb on + strand, within GFF6470at 47.187 kb on - strand, within GFF6470at 47.285 kb on + strand, within GFF6470at 47.285 kb on + strand, within GFF6470at 47.285 kb on + strand, within GFF6470at 47.285 kb on + strand, within GFF6470at 47.286 kb on - strand, within GFF6470at 47.286 kb on - strand, within GFF6470at 47.402 kb on + strand, within GFF6470at 47.402 kb on + strand, within GFF6470at 47.403 kb on - strand, within GFF6470at 47.403 kb on - strand, within GFF6470at 47.403 kb on - strand, within GFF6470at 47.450 kb on + strand, within GFF6470at 47.450 kb on + strand, within GFF6470at 47.450 kb on + strand, within GFF6470at 47.451 kb on - strand, within GFF6470at 47.478 kb on - strand, within GFF6470at 47.478 kb on - strand, within GFF6470at 47.504 kb on + strand, within GFF6470at 47.504 kb on + strand, within GFF6470at 47.504 kb on + strand, within GFF6470at 47.504 kb on + strand, within GFF6470at 47.505 kb on - strand, within GFF6470at 47.505 kb on - strand, within GFF6470at 47.505 kb on - strand, within GFF6470at 47.505 kb on - strand, within GFF6470at 47.505 kb on - strand, within GFF6470at 47.505 kb on - strand, within GFF6470at 47.945 kb on + strandat 47.945 kb on + strandat 47.945 kb on + strandat 47.945 kb on + strandat 47.945 kb on + strandat 47.945 kb on + strandat 47.946 kb on - strandat 47.946 kb on - strandat 47.946 kb on - strandat 47.946 kb on - strandat 47.946 kb on - strandat 47.946 kb on - strandat 47.946 kb on - strandat 47.946 kb on - strandat 47.946 kb on - strandat 47.984 kb on + strandat 47.985 kb on - strandat 47.993 kb on + strandat 47.993 kb on + strandat 47.993 kb on + strandat 47.993 kb on + strandat 47.993 kb on + strandat 47.994 kb on - strandat 47.994 kb on - strandat 47.994 kb on - strandat 48.009 kb on - strandat 48.009 kb on - strandat 48.071 kb on + strand, within GFF6471at 48.071 kb on + strand, within GFF6471at 48.399 kb on - strand, within GFF6471at 48.399 kb on - strand, within GFF6471at 48.399 kb on - strand, within GFF6471at 48.823 kb on + strandat 48.823 kb on + strandat 48.823 kb on + strandat 48.823 kb on + strandat 48.823 kb on + strandat 48.823 kb on + strandat 48.823 kb on + strandat 48.823 kb on + strandat 48.824 kb on - strandat 48.824 kb on - strandat 48.824 kb on - strandat 48.824 kb on - strandat 48.824 kb on - strandat 48.824 kb on - strandat 48.824 kb on - strandat 48.824 kb on - strandat 48.824 kb on - strandat 48.824 kb on - strandat 48.917 kb on + strandat 48.917 kb on + strandat 48.968 kb on + strandat 48.968 kb on + strandat 48.969 kb on - strandat 48.974 kb on + strandat 48.974 kb on + strandat 48.974 kb on + strandat 48.974 kb on + strandat 48.974 kb on + strandat 48.975 kb on - strandat 48.975 kb on - strandat 48.975 kb on - strandat 48.975 kb on - strandat 48.975 kb on - strandat 48.975 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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45,790 + GFF6468 0.54 +1.0
45,791 - GFF6468 0.55 -1.3
45,791 - GFF6468 0.55 +2.7
46,222 + -3.2
46,223 - +0.1
46,223 - -4.3
46,405 + GFF6469 0.36 -1.4
46,405 + GFF6469 0.36 -0.4
46,405 + GFF6469 0.36 -3.1
46,405 + GFF6469 0.36 -2.7
46,405 + GFF6469 0.36 +0.5
46,405 + GFF6469 0.36 -1.1
46,405 + GFF6469 0.36 -2.4
46,405 + GFF6469 0.36 -1.6
46,406 - GFF6469 0.36 -4.2
46,406 - GFF6469 0.36 -2.1
46,406 - GFF6469 0.36 -4.0
46,406 - GFF6469 0.36 +1.7
46,465 - GFF6469 0.48 -1.3
46,563 + GFF6469 0.68 -2.0
46,626 + GFF6469 0.81 -0.6
46,626 + GFF6469 0.81 +0.5
46,680 + -1.9
46,681 - -2.7
46,681 - +0.2
46,847 + GFF6470 0.10 -2.4
46,899 + GFF6470 0.14 +0.3
46,899 + GFF6470 0.14 -2.1
46,899 + GFF6470 0.14 -1.7
46,900 - GFF6470 0.14 -0.1
46,900 - GFF6470 0.14 -0.7
47,115 - GFF6470 0.31 +0.6
47,134 + GFF6470 0.33 -0.5
47,135 - GFF6470 0.33 -0.3
47,135 - GFF6470 0.33 +2.1
47,135 - GFF6470 0.33 -0.6
47,183 + GFF6470 0.36 +0.1
47,187 - GFF6470 0.37 +0.1
47,285 + GFF6470 0.44 -0.7
47,285 + GFF6470 0.44 -0.5
47,285 + GFF6470 0.44 -2.5
47,285 + GFF6470 0.44 +1.7
47,286 - GFF6470 0.44 +0.9
47,286 - GFF6470 0.44 -1.4
47,402 + GFF6470 0.54 -0.1
47,402 + GFF6470 0.54 +0.1
47,403 - GFF6470 0.54 -2.1
47,403 - GFF6470 0.54 -0.9
47,403 - GFF6470 0.54 -0.3
47,450 + GFF6470 0.57 +0.1
47,450 + GFF6470 0.57 +3.5
47,450 + GFF6470 0.57 -3.1
47,451 - GFF6470 0.57 -1.7
47,478 - GFF6470 0.59 +0.1
47,478 - GFF6470 0.59 -1.6
47,504 + GFF6470 0.62 +1.7
47,504 + GFF6470 0.62 -0.9
47,504 + GFF6470 0.62 -1.1
47,504 + GFF6470 0.62 +0.4
47,505 - GFF6470 0.62 +0.4
47,505 - GFF6470 0.62 -0.3
47,505 - GFF6470 0.62 -0.3
47,505 - GFF6470 0.62 +0.8
47,505 - GFF6470 0.62 -1.1
47,505 - GFF6470 0.62 +2.3
47,945 + -1.0
47,945 + +0.6
47,945 + -0.8
47,945 + +0.7
47,945 + +1.3
47,945 + -1.1
47,946 - -2.7
47,946 - -1.4
47,946 - +0.7
47,946 - +0.5
47,946 - -0.2
47,946 - +0.6
47,946 - +0.9
47,946 - +0.9
47,946 - -0.3
47,984 + -1.9
47,985 - -1.7
47,993 + -1.7
47,993 + -2.5
47,993 + -0.7
47,993 + +0.8
47,993 + -0.6
47,994 - +0.1
47,994 - -0.9
47,994 - +1.3
48,009 - -0.6
48,009 - +0.3
48,071 + GFF6471 0.11 -0.3
48,071 + GFF6471 0.11 -0.4
48,399 - GFF6471 0.53 +0.5
48,399 - GFF6471 0.53 -2.4
48,399 - GFF6471 0.53 -1.6
48,823 + -0.3
48,823 + +1.7
48,823 + -1.9
48,823 + +0.5
48,823 + -1.4
48,823 + -2.0
48,823 + +0.3
48,823 + +1.1
48,824 - -1.3
48,824 - -0.3
48,824 - -2.6
48,824 - +1.3
48,824 - +2.5
48,824 - -1.9
48,824 - -3.1
48,824 - -1.3
48,824 - +1.6
48,824 - -3.1
48,917 + +0.4
48,917 + -0.3
48,968 + -0.6
48,968 + -1.0
48,969 - -0.2
48,974 + -1.0
48,974 + -1.7
48,974 + +1.0
48,974 + +0.8
48,974 + -0.6
48,975 - +2.5
48,975 - -0.9
48,975 - -1.9
48,975 - -2.4
48,975 - +0.1
48,975 - +1.2

Or see this region's nucleotide sequence