Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6350 and GFF6351 are separated by 31 nucleotides GFF6351 and GFF6352 are separated by 1 nucleotides GFF6352 and GFF6353 overlap by 1 nucleotides
GFF6350 - T6SS Serine/threonine protein kinase (EC 2.7.11.1) PpkA, at 11,737 to 13,650
GFF6350
GFF6351 - T6SS associated component TagF (ImpM), at 13,682 to 14,395
GFF6351
GFF6352 - T6SS component TssM (IcmF/VasK), at 14,397 to 18,056
GFF6352
GFF6353 - T6SS outer membrane component TssL (ImpK/VasF) / OmpA/MotB domain, at 18,056 to 19,426
GFF6353
Position (kb) 14
15
16
17
18
19 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 13.463 kb on + strand at 13.463 kb on + strand at 13.463 kb on + strand at 13.463 kb on + strand at 13.463 kb on + strand at 13.463 kb on + strand at 13.463 kb on + strand at 13.464 kb on - strand at 13.464 kb on - strand at 13.464 kb on - strand at 13.464 kb on - strand at 13.464 kb on - strand at 13.503 kb on - strand at 13.797 kb on + strand, within GFF6351 at 13.879 kb on + strand, within GFF6351 at 13.879 kb on + strand, within GFF6351 at 14.025 kb on + strand, within GFF6351 at 14.025 kb on + strand, within GFF6351 at 14.062 kb on - strand, within GFF6351 at 14.103 kb on + strand, within GFF6351 at 14.205 kb on + strand, within GFF6351 at 14.206 kb on - strand, within GFF6351 at 14.206 kb on - strand, within GFF6351 at 14.452 kb on + strand at 14.452 kb on + strand at 14.452 kb on + strand at 14.452 kb on + strand at 14.453 kb on - strand at 14.702 kb on - strand at 14.860 kb on + strand, within GFF6352 at 15.277 kb on + strand, within GFF6352 at 15.277 kb on + strand, within GFF6352 at 15.278 kb on - strand, within GFF6352 at 15.278 kb on - strand, within GFF6352 at 15.673 kb on + strand, within GFF6352 at 15.674 kb on - strand, within GFF6352 at 15.960 kb on + strand, within GFF6352 at 15.960 kb on + strand, within GFF6352 at 15.961 kb on - strand, within GFF6352 at 15.980 kb on - strand, within GFF6352 at 16.216 kb on + strand, within GFF6352 at 16.235 kb on - strand, within GFF6352 at 16.235 kb on - strand, within GFF6352 at 16.235 kb on - strand, within GFF6352 at 16.384 kb on + strand, within GFF6352 at 16.558 kb on + strand, within GFF6352 at 16.559 kb on - strand, within GFF6352 at 16.736 kb on - strand, within GFF6352 at 16.736 kb on - strand, within GFF6352 at 16.786 kb on + strand, within GFF6352 at 16.850 kb on - strand, within GFF6352 at 17.042 kb on - strand, within GFF6352 at 17.183 kb on - strand, within GFF6352 at 17.227 kb on - strand, within GFF6352 at 17.452 kb on + strand, within GFF6352 at 17.626 kb on + strand, within GFF6352 at 17.626 kb on + strand, within GFF6352 at 17.626 kb on + strand, within GFF6352 at 17.626 kb on + strand, within GFF6352 at 17.627 kb on - strand, within GFF6352 at 18.030 kb on - strand at 18.396 kb on + strand, within GFF6353 at 18.876 kb on + strand, within GFF6353 at 18.877 kb on - strand, within GFF6353 at 18.877 kb on - strand, within GFF6353
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 13,463 + -0.2 13,463 + +0.8 13,463 + +0.3 13,463 + -3.8 13,463 + +2.1 13,463 + -1.2 13,463 + -2.9 13,464 - -0.6 13,464 - +1.1 13,464 - +1.1 13,464 - +1.0 13,464 - -0.9 13,503 - +0.6 13,797 + GFF6351 0.16 -2.2 13,879 + GFF6351 0.28 +0.3 13,879 + GFF6351 0.28 -2.1 14,025 + GFF6351 0.48 -2.2 14,025 + GFF6351 0.48 +0.7 14,062 - GFF6351 0.53 -0.3 14,103 + GFF6351 0.59 +0.3 14,205 + GFF6351 0.73 -0.7 14,206 - GFF6351 0.73 +0.8 14,206 - GFF6351 0.73 +0.7 14,452 + -0.8 14,452 + -0.0 14,452 + +1.3 14,452 + +3.9 14,453 - -0.8 14,702 - -1.8 14,860 + GFF6352 0.13 +0.9 15,277 + GFF6352 0.24 +0.2 15,277 + GFF6352 0.24 -2.4 15,278 - GFF6352 0.24 +0.4 15,278 - GFF6352 0.24 +0.3 15,673 + GFF6352 0.35 -0.6 15,674 - GFF6352 0.35 +0.6 15,960 + GFF6352 0.43 +3.3 15,960 + GFF6352 0.43 -2.2 15,961 - GFF6352 0.43 +1.5 15,980 - GFF6352 0.43 -2.5 16,216 + GFF6352 0.50 +1.1 16,235 - GFF6352 0.50 -4.2 16,235 - GFF6352 0.50 +0.6 16,235 - GFF6352 0.50 +1.7 16,384 + GFF6352 0.54 -0.0 16,558 + GFF6352 0.59 +1.3 16,559 - GFF6352 0.59 +2.1 16,736 - GFF6352 0.64 -2.7 16,736 - GFF6352 0.64 +1.5 16,786 + GFF6352 0.65 -1.3 16,850 - GFF6352 0.67 -2.3 17,042 - GFF6352 0.72 +1.5 17,183 - GFF6352 0.76 -1.3 17,227 - GFF6352 0.77 -1.9 17,452 + GFF6352 0.83 +0.4 17,626 + GFF6352 0.88 -0.5 17,626 + GFF6352 0.88 -1.0 17,626 + GFF6352 0.88 -0.7 17,626 + GFF6352 0.88 +0.9 17,627 - GFF6352 0.88 -2.4 18,030 - -0.2 18,396 + GFF6353 0.25 -0.2 18,876 + GFF6353 0.60 +0.7 18,877 - GFF6353 0.60 +0.9 18,877 - GFF6353 0.60 -1.3
Or see this region's nucleotide sequence