Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6341 and GFF6342 are separated by 798 nucleotides
GFF6341 - no description, at 5,292 to 5,549
GFF6341
GFF6342 - Mobile element protein, at 6,348 to 6,698
GFF6342
Position (kb) 5
6 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4.390 kb on + strand at 4.390 kb on + strand at 4.391 kb on - strand at 4.391 kb on - strand at 4.439 kb on - strand at 4.661 kb on - strand at 4.661 kb on - strand at 4.796 kb on + strand at 4.796 kb on + strand at 4.796 kb on + strand at 4.796 kb on + strand at 4.796 kb on + strand at 4.797 kb on - strand at 4.797 kb on - strand at 4.797 kb on - strand at 5.171 kb on + strand at 5.171 kb on + strand at 5.172 kb on - strand at 5.172 kb on - strand at 5.172 kb on - strand at 5.337 kb on + strand, within GFF6341 at 5.337 kb on + strand, within GFF6341 at 5.338 kb on - strand, within GFF6341 at 5.338 kb on - strand, within GFF6341 at 5.338 kb on - strand, within GFF6341 at 5.368 kb on + strand, within GFF6341 at 5.368 kb on + strand, within GFF6341 at 5.368 kb on + strand, within GFF6341 at 5.368 kb on + strand, within GFF6341 at 5.368 kb on + strand, within GFF6341 at 5.368 kb on + strand, within GFF6341 at 5.369 kb on - strand, within GFF6341 at 5.369 kb on - strand, within GFF6341 at 5.369 kb on - strand, within GFF6341 at 5.369 kb on - strand, within GFF6341 at 5.369 kb on - strand, within GFF6341 at 5.372 kb on + strand, within GFF6341 at 5.372 kb on + strand, within GFF6341 at 5.372 kb on + strand, within GFF6341 at 5.373 kb on - strand, within GFF6341 at 5.373 kb on - strand, within GFF6341 at 5.373 kb on - strand, within GFF6341 at 5.373 kb on - strand, within GFF6341 at 5.373 kb on - strand, within GFF6341 at 5.373 kb on - strand, within GFF6341 at 5.397 kb on - strand, within GFF6341 at 5.404 kb on + strand, within GFF6341 at 5.478 kb on + strand, within GFF6341 at 5.478 kb on + strand, within GFF6341 at 5.478 kb on + strand, within GFF6341 at 5.479 kb on - strand, within GFF6341 at 5.479 kb on - strand, within GFF6341 at 5.479 kb on - strand, within GFF6341 at 5.494 kb on - strand, within GFF6341 at 5.520 kb on + strand, within GFF6341 at 5.521 kb on - strand, within GFF6341 at 5.595 kb on + strand at 5.595 kb on + strand at 5.596 kb on - strand at 5.596 kb on - strand at 5.596 kb on - strand at 5.596 kb on - strand at 5.796 kb on + strand at 5.797 kb on - strand at 5.810 kb on - strand at 5.865 kb on + strand at 5.865 kb on + strand at 5.866 kb on - strand at 5.930 kb on + strand at 5.931 kb on - strand at 5.931 kb on - strand at 5.931 kb on - strand at 5.931 kb on - strand at 5.988 kb on + strand at 5.988 kb on + strand at 5.989 kb on - strand at 5.989 kb on - strand at 5.989 kb on - strand at 6.044 kb on + strand at 6.045 kb on - strand at 6.052 kb on + strand at 6.052 kb on + strand at 6.053 kb on - strand at 6.053 kb on - strand at 6.053 kb on - strand at 6.053 kb on - strand at 6.061 kb on + strand at 6.061 kb on + strand at 6.080 kb on - strand at 6.080 kb on - strand at 6.080 kb on - strand at 6.103 kb on + strand at 6.104 kb on - strand at 6.104 kb on - strand at 6.104 kb on - strand at 6.213 kb on + strand at 6.213 kb on + strand at 6.214 kb on - strand at 6.214 kb on - strand at 6.214 kb on - strand at 6.214 kb on - strand at 6.214 kb on - strand at 6.263 kb on + strand at 6.263 kb on + strand at 6.263 kb on + strand at 6.263 kb on + strand at 6.263 kb on + strand at 6.263 kb on + strand at 6.263 kb on + strand at 6.263 kb on + strand at 6.263 kb on + strand at 6.263 kb on + strand at 6.263 kb on + strand at 6.264 kb on - strand at 6.264 kb on - strand at 6.264 kb on - strand at 6.264 kb on - strand at 6.264 kb on - strand at 6.278 kb on + strand at 6.278 kb on + strand at 6.278 kb on + strand at 6.278 kb on + strand at 6.278 kb on + strand at 6.278 kb on + strand at 6.278 kb on + strand at 6.279 kb on - strand at 6.279 kb on - strand at 6.350 kb on - strand at 6.360 kb on + strand at 6.360 kb on + strand at 6.360 kb on + strand at 6.360 kb on + strand at 6.360 kb on + strand at 6.360 kb on + strand at 6.360 kb on + strand at 6.360 kb on + strand at 6.361 kb on - strand at 6.361 kb on - strand at 6.420 kb on + strand, within GFF6342 at 6.420 kb on + strand, within GFF6342 at 6.421 kb on - strand, within GFF6342 at 6.421 kb on - strand, within GFF6342 at 6.421 kb on - strand, within GFF6342 at 6.427 kb on + strand, within GFF6342 at 6.427 kb on + strand, within GFF6342 at 6.428 kb on - strand, within GFF6342
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 4,390 + -3.1 4,390 + -0.2 4,391 - -1.9 4,391 - +0.5 4,439 - -0.6 4,661 - -0.5 4,661 - -0.1 4,796 + +2.0 4,796 + -0.8 4,796 + +0.3 4,796 + -1.3 4,796 + -1.4 4,797 - +0.3 4,797 - +0.3 4,797 - -1.2 5,171 + -2.8 5,171 + +0.3 5,172 - -1.3 5,172 - +3.1 5,172 - +1.2 5,337 + GFF6341 0.17 +0.1 5,337 + GFF6341 0.17 +0.7 5,338 - GFF6341 0.18 -2.0 5,338 - GFF6341 0.18 +0.3 5,338 - GFF6341 0.18 -1.9 5,368 + GFF6341 0.29 +1.3 5,368 + GFF6341 0.29 -2.7 5,368 + GFF6341 0.29 -0.9 5,368 + GFF6341 0.29 +0.4 5,368 + GFF6341 0.29 +0.1 5,368 + GFF6341 0.29 +1.1 5,369 - GFF6341 0.30 +2.7 5,369 - GFF6341 0.30 -0.3 5,369 - GFF6341 0.30 -1.4 5,369 - GFF6341 0.30 -1.2 5,369 - GFF6341 0.30 -0.7 5,372 + GFF6341 0.31 +0.0 5,372 + GFF6341 0.31 +0.2 5,372 + GFF6341 0.31 -0.4 5,373 - GFF6341 0.31 -0.5 5,373 - GFF6341 0.31 -0.4 5,373 - GFF6341 0.31 -1.4 5,373 - GFF6341 0.31 -2.3 5,373 - GFF6341 0.31 -0.5 5,373 - GFF6341 0.31 -0.2 5,397 - GFF6341 0.41 -0.9 5,404 + GFF6341 0.43 -1.7 5,478 + GFF6341 0.72 +0.7 5,478 + GFF6341 0.72 -0.1 5,478 + GFF6341 0.72 +0.3 5,479 - GFF6341 0.72 -1.3 5,479 - GFF6341 0.72 -1.0 5,479 - GFF6341 0.72 +0.1 5,494 - GFF6341 0.78 +0.3 5,520 + GFF6341 0.88 +0.2 5,521 - GFF6341 0.89 -0.6 5,595 + +0.5 5,595 + -0.3 5,596 - -1.2 5,596 - -0.5 5,596 - +0.6 5,596 - -1.8 5,796 + +0.3 5,797 - -1.9 5,810 - -0.4 5,865 + +0.7 5,865 + -0.9 5,866 - +1.1 5,930 + -0.5 5,931 - -1.2 5,931 - -1.4 5,931 - -1.6 5,931 - +1.0 5,988 + -0.0 5,988 + -2.0 5,989 - +0.9 5,989 - -0.0 5,989 - +0.9 6,044 + +0.3 6,045 - -1.5 6,052 + +0.2 6,052 + +0.6 6,053 - +1.1 6,053 - -0.6 6,053 - +1.9 6,053 - +0.2 6,061 + -0.0 6,061 + -3.4 6,080 - -0.3 6,080 - -2.2 6,080 - -0.3 6,103 + -0.7 6,104 - +0.0 6,104 - -1.2 6,104 - -2.2 6,213 + +0.7 6,213 + +0.7 6,214 - -1.3 6,214 - +1.0 6,214 - +1.4 6,214 - -3.1 6,214 - -2.2 6,263 + -0.6 6,263 + +0.5 6,263 + +1.6 6,263 + +1.2 6,263 + -0.3 6,263 + +1.3 6,263 + +2.3 6,263 + +1.1 6,263 + +0.3 6,263 + -0.7 6,263 + -2.8 6,264 - +1.7 6,264 - +1.8 6,264 - +0.4 6,264 - +1.1 6,264 - +0.5 6,278 + +1.0 6,278 + +0.3 6,278 + +2.1 6,278 + +0.3 6,278 + +0.2 6,278 + -0.0 6,278 + -0.1 6,279 - -3.4 6,279 - -2.0 6,350 - +0.9 6,360 + -0.8 6,360 + -2.9 6,360 + -0.0 6,360 + +0.1 6,360 + -0.4 6,360 + -2.3 6,360 + -0.5 6,360 + -0.3 6,361 - -2.0 6,361 - +0.7 6,420 + GFF6342 0.21 +2.1 6,420 + GFF6342 0.21 +0.8 6,421 - GFF6342 0.21 +0.4 6,421 - GFF6342 0.21 -2.6 6,421 - GFF6342 0.21 +1.1 6,427 + GFF6342 0.23 +1.5 6,427 + GFF6342 0.23 +0.7 6,428 - GFF6342 0.23 +0.3
Or see this region's nucleotide sequence