Strain Fitness in Variovorax sp. SCN45 around GFF6258

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6256 and GFF6257 overlap by 4 nucleotidesGFF6257 and GFF6258 overlap by 4 nucleotidesGFF6258 and GFF6259 overlap by 4 nucleotides GFF6256 - Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL (EC 2.7.8.37), at 49,985 to 50,698 GFF6256 GFF6257 - Phosphonates utilization ATP-binding protein PhnK, at 50,695 to 51,483 GFF6257 GFF6258 - Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase (EC 4.7.1.1), at 51,480 to 52,352 GFF6258 GFF6259 - Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnI (EC 2.7.8.37), at 52,349 to 53,446 GFF6259 Position (kb) 51 52 53Strain fitness (log2 ratio) -3 -2 -1 0 1at 50.514 kb on + strand, within GFF6256at 50.515 kb on - strand, within GFF6256at 50.523 kb on + strand, within GFF6256at 50.523 kb on + strand, within GFF6256at 50.523 kb on + strand, within GFF6256at 50.625 kb on - strand, within GFF6256at 50.732 kb on + strandat 50.732 kb on + strandat 50.732 kb on + strandat 50.733 kb on - strandat 51.426 kb on - strandat 51.697 kb on + strand, within GFF6258at 51.698 kb on - strand, within GFF6258at 51.713 kb on - strand, within GFF6258at 51.713 kb on - strand, within GFF6258at 51.713 kb on - strand, within GFF6258at 51.713 kb on - strand, within GFF6258at 51.841 kb on + strand, within GFF6258at 51.841 kb on + strand, within GFF6258at 51.841 kb on + strand, within GFF6258at 51.841 kb on + strand, within GFF6258at 51.841 kb on + strand, within GFF6258at 51.841 kb on + strand, within GFF6258at 51.842 kb on - strand, within GFF6258at 51.842 kb on - strand, within GFF6258at 51.880 kb on + strand, within GFF6258at 51.986 kb on - strand, within GFF6258at 52.322 kb on - strandat 52.322 kb on - strandat 52.333 kb on + strandat 52.333 kb on + strandat 52.333 kb on + strandat 52.334 kb on - strandat 52.419 kb on + strandat 52.419 kb on + strandat 52.419 kb on + strandat 52.419 kb on + strandat 52.419 kb on + strandat 52.419 kb on + strandat 52.419 kb on + strandat 52.419 kb on + strandat 52.603 kb on - strand, within GFF6259at 52.794 kb on + strand, within GFF6259at 52.795 kb on - strand, within GFF6259at 52.932 kb on - strand, within GFF6259at 52.932 kb on - strand, within GFF6259at 53.076 kb on + strand, within GFF6259at 53.077 kb on - strand, within GFF6259at 53.077 kb on - strand, within GFF6259at 53.082 kb on + strand, within GFF6259at 53.082 kb on + strand, within GFF6259at 53.082 kb on + strand, within GFF6259at 53.083 kb on - strand, within GFF6259at 53.083 kb on - strand, within GFF6259at 53.206 kb on - strand, within GFF6259at 53.283 kb on + strand, within GFF6259at 53.283 kb on + strand, within GFF6259at 53.283 kb on + strand, within GFF6259at 53.283 kb on + strand, within GFF6259at 53.284 kb on - strand, within GFF6259

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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50,514 + GFF6256 0.74 +1.3
50,515 - GFF6256 0.74 -0.3
50,523 + GFF6256 0.75 -1.5
50,523 + GFF6256 0.75 -2.7
50,523 + GFF6256 0.75 -2.1
50,625 - GFF6256 0.90 -0.8
50,732 + -0.1
50,732 + -0.6
50,732 + +1.3
50,733 - +0.3
51,426 - -1.0
51,697 + GFF6258 0.25 +0.9
51,698 - GFF6258 0.25 +1.2
51,713 - GFF6258 0.27 -0.5
51,713 - GFF6258 0.27 +0.8
51,713 - GFF6258 0.27 -0.6
51,713 - GFF6258 0.27 -0.1
51,841 + GFF6258 0.41 +0.4
51,841 + GFF6258 0.41 -0.9
51,841 + GFF6258 0.41 -0.9
51,841 + GFF6258 0.41 +0.1
51,841 + GFF6258 0.41 +1.6
51,841 + GFF6258 0.41 -0.5
51,842 - GFF6258 0.41 +0.2
51,842 - GFF6258 0.41 -1.4
51,880 + GFF6258 0.46 -1.6
51,986 - GFF6258 0.58 -1.5
52,322 - +0.1
52,322 - -1.9
52,333 + -0.3
52,333 + -3.6
52,333 + -1.9
52,334 - -2.6
52,419 + +0.5
52,419 + +0.5
52,419 + +0.8
52,419 + -0.9
52,419 + -1.3
52,419 + +0.2
52,419 + -0.8
52,419 + -0.5
52,603 - GFF6259 0.23 +0.8
52,794 + GFF6259 0.41 -2.0
52,795 - GFF6259 0.41 -2.3
52,932 - GFF6259 0.53 -0.5
52,932 - GFF6259 0.53 -0.3
53,076 + GFF6259 0.66 -1.4
53,077 - GFF6259 0.66 +0.1
53,077 - GFF6259 0.66 -0.7
53,082 + GFF6259 0.67 -2.4
53,082 + GFF6259 0.67 -0.5
53,082 + GFF6259 0.67 -0.7
53,083 - GFF6259 0.67 -1.0
53,083 - GFF6259 0.67 -2.2
53,206 - GFF6259 0.78 -1.9
53,283 + GFF6259 0.85 +0.1
53,283 + GFF6259 0.85 -0.5
53,283 + GFF6259 0.85 -1.5
53,283 + GFF6259 0.85 +1.0
53,284 - GFF6259 0.85 -2.4

Or see this region's nucleotide sequence