Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6228 and GFF6229 overlap by 4 nucleotides GFF6229 and GFF6230 are separated by 13 nucleotides
GFF6228 - ABC transporter, substrate-binding protein (cluster 15, trp?), at 11,464 to 12,570
GFF6228
GFF6229 - hypothetical protein, at 12,567 to 14,549
GFF6229
GFF6230 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 14,563 to 15,540
GFF6230
Position (kb) 12
13
14
15 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 12.163 kb on + strand, within GFF6228 at 13.116 kb on + strand, within GFF6229 at 13.116 kb on + strand, within GFF6229 at 13.117 kb on - strand, within GFF6229 at 13.965 kb on + strand, within GFF6229 at 13.965 kb on + strand, within GFF6229 at 13.965 kb on + strand, within GFF6229 at 13.965 kb on + strand, within GFF6229 at 13.965 kb on + strand, within GFF6229 at 13.965 kb on + strand, within GFF6229 at 13.966 kb on - strand, within GFF6229 at 14.316 kb on + strand, within GFF6229 at 14.317 kb on - strand, within GFF6229 at 14.317 kb on - strand, within GFF6229 at 14.930 kb on + strand, within GFF6230 at 14.930 kb on + strand, within GFF6230 at 14.931 kb on - strand, within GFF6230 at 14.931 kb on - strand, within GFF6230 at 14.931 kb on - strand, within GFF6230 at 14.931 kb on - strand, within GFF6230 at 15.086 kb on + strand, within GFF6230 at 15.086 kb on + strand, within GFF6230 at 15.086 kb on + strand, within GFF6230 at 15.086 kb on + strand, within GFF6230 at 15.087 kb on - strand, within GFF6230 at 15.087 kb on - strand, within GFF6230 at 15.087 kb on - strand, within GFF6230 at 15.087 kb on - strand, within GFF6230 at 15.087 kb on - strand, within GFF6230 at 15.087 kb on - strand, within GFF6230 at 15.087 kb on - strand, within GFF6230 at 15.087 kb on - strand, within GFF6230 at 15.087 kb on - strand, within GFF6230
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 12,163 + GFF6228 0.63 -1.3 13,116 + GFF6229 0.28 -0.5 13,116 + GFF6229 0.28 +0.5 13,117 - GFF6229 0.28 -0.5 13,965 + GFF6229 0.70 -0.7 13,965 + GFF6229 0.70 -1.3 13,965 + GFF6229 0.70 +0.1 13,965 + GFF6229 0.70 +1.4 13,965 + GFF6229 0.70 -3.6 13,965 + GFF6229 0.70 +1.1 13,966 - GFF6229 0.71 +1.2 14,316 + GFF6229 0.88 +1.1 14,317 - GFF6229 0.88 +0.2 14,317 - GFF6229 0.88 +0.0 14,930 + GFF6230 0.38 -0.1 14,930 + GFF6230 0.38 -1.6 14,931 - GFF6230 0.38 +1.8 14,931 - GFF6230 0.38 +1.1 14,931 - GFF6230 0.38 +0.9 14,931 - GFF6230 0.38 -1.6 15,086 + GFF6230 0.53 -1.0 15,086 + GFF6230 0.53 -0.0 15,086 + GFF6230 0.53 +0.1 15,086 + GFF6230 0.53 +1.1 15,087 - GFF6230 0.54 -0.1 15,087 - GFF6230 0.54 +0.8 15,087 - GFF6230 0.54 +2.5 15,087 - GFF6230 0.54 +1.1 15,087 - GFF6230 0.54 -2.5 15,087 - GFF6230 0.54 -1.7 15,087 - GFF6230 0.54 -3.3 15,087 - GFF6230 0.54 +0.8 15,087 - GFF6230 0.54 -0.4
Or see this region's nucleotide sequence