Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF620 and GFF621 are separated by 153 nucleotides GFF621 and GFF622 overlap by 4 nucleotides GFF622 and GFF623 overlap by 4 nucleotides
GFF620 - Transcriptional regulator, LysR family, at 667,209 to 668,213
GFF620
GFF621 - Aspartate aminotransferase (EC 2.6.1.1), at 668,367 to 669,545
GFF621
GFF622 - BUG/TctC family periplasmic protein, at 669,542 to 670,528
GFF622
GFF623 - Demethylmenaquinone methyltransferase-like protein, at 670,525 to 671,253
GFF623
Position (kb) 668
669
670 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 667.399 kb on + strand, within GFF620 at 667.483 kb on + strand, within GFF620 at 667.483 kb on + strand, within GFF620 at 667.483 kb on + strand, within GFF620 at 667.484 kb on - strand, within GFF620 at 667.484 kb on - strand, within GFF620 at 667.484 kb on - strand, within GFF620 at 667.603 kb on + strand, within GFF620 at 667.603 kb on + strand, within GFF620 at 667.603 kb on + strand, within GFF620 at 667.603 kb on + strand, within GFF620 at 667.604 kb on - strand, within GFF620 at 667.604 kb on - strand, within GFF620 at 667.604 kb on - strand, within GFF620 at 667.604 kb on - strand, within GFF620 at 667.881 kb on + strand, within GFF620 at 667.881 kb on + strand, within GFF620 at 667.882 kb on - strand, within GFF620 at 667.882 kb on - strand, within GFF620 at 667.882 kb on - strand, within GFF620 at 668.226 kb on + strand at 668.227 kb on - strand at 668.227 kb on - strand at 668.227 kb on - strand at 668.227 kb on - strand at 668.306 kb on + strand at 668.307 kb on - strand at 668.580 kb on + strand, within GFF621 at 668.856 kb on + strand, within GFF621 at 668.856 kb on + strand, within GFF621 at 668.856 kb on + strand, within GFF621 at 668.856 kb on + strand, within GFF621 at 668.857 kb on - strand, within GFF621 at 668.857 kb on - strand, within GFF621 at 668.857 kb on - strand, within GFF621 at 668.857 kb on - strand, within GFF621 at 668.857 kb on - strand, within GFF621 at 668.857 kb on - strand, within GFF621 at 668.857 kb on - strand, within GFF621 at 668.864 kb on + strand, within GFF621 at 668.864 kb on + strand, within GFF621 at 668.934 kb on + strand, within GFF621 at 668.934 kb on + strand, within GFF621 at 668.934 kb on + strand, within GFF621 at 668.934 kb on + strand, within GFF621 at 668.934 kb on + strand, within GFF621 at 668.934 kb on + strand, within GFF621 at 668.935 kb on - strand, within GFF621 at 668.949 kb on + strand, within GFF621 at 668.949 kb on + strand, within GFF621 at 668.949 kb on + strand, within GFF621 at 668.950 kb on - strand, within GFF621 at 668.950 kb on - strand, within GFF621 at 669.036 kb on + strand, within GFF621 at 669.037 kb on - strand, within GFF621 at 669.288 kb on + strand, within GFF621 at 669.288 kb on + strand, within GFF621 at 669.289 kb on - strand, within GFF621 at 669.289 kb on - strand, within GFF621 at 669.417 kb on + strand, within GFF621 at 669.932 kb on + strand, within GFF622 at 669.933 kb on - strand, within GFF622 at 669.933 kb on - strand, within GFF622 at 669.933 kb on - strand, within GFF622 at 669.933 kb on - strand, within GFF622 at 669.989 kb on + strand, within GFF622 at 669.990 kb on - strand, within GFF622 at 670.106 kb on + strand, within GFF622 at 670.107 kb on - strand, within GFF622 at 670.107 kb on - strand, within GFF622 at 670.107 kb on - strand, within GFF622 at 670.107 kb on - strand, within GFF622 at 670.107 kb on - strand, within GFF622
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 667,399 + GFF620 0.19 +0.7 667,483 + GFF620 0.27 -1.1 667,483 + GFF620 0.27 -1.8 667,483 + GFF620 0.27 +0.0 667,484 - GFF620 0.27 -0.1 667,484 - GFF620 0.27 +0.1 667,484 - GFF620 0.27 +0.8 667,603 + GFF620 0.39 -2.3 667,603 + GFF620 0.39 +0.3 667,603 + GFF620 0.39 -1.1 667,603 + GFF620 0.39 +2.0 667,604 - GFF620 0.39 -0.5 667,604 - GFF620 0.39 -1.3 667,604 - GFF620 0.39 -1.8 667,604 - GFF620 0.39 -0.4 667,881 + GFF620 0.67 +0.7 667,881 + GFF620 0.67 +1.0 667,882 - GFF620 0.67 +1.2 667,882 - GFF620 0.67 -1.5 667,882 - GFF620 0.67 -1.0 668,226 + -1.3 668,227 - +0.6 668,227 - -1.8 668,227 - -2.0 668,227 - -1.1 668,306 + +0.4 668,307 - +1.5 668,580 + GFF621 0.18 -3.0 668,856 + GFF621 0.41 -3.2 668,856 + GFF621 0.41 -1.2 668,856 + GFF621 0.41 -0.8 668,856 + GFF621 0.41 +1.6 668,857 - GFF621 0.42 +1.0 668,857 - GFF621 0.42 -1.1 668,857 - GFF621 0.42 +0.3 668,857 - GFF621 0.42 -2.5 668,857 - GFF621 0.42 +1.9 668,857 - GFF621 0.42 -0.6 668,857 - GFF621 0.42 -2.2 668,864 + GFF621 0.42 -1.1 668,864 + GFF621 0.42 +1.9 668,934 + GFF621 0.48 -3.0 668,934 + GFF621 0.48 -1.1 668,934 + GFF621 0.48 -0.0 668,934 + GFF621 0.48 -2.4 668,934 + GFF621 0.48 -1.3 668,934 + GFF621 0.48 +2.1 668,935 - GFF621 0.48 -0.7 668,949 + GFF621 0.49 -1.8 668,949 + GFF621 0.49 -0.9 668,949 + GFF621 0.49 -2.1 668,950 - GFF621 0.49 -0.1 668,950 - GFF621 0.49 -2.2 669,036 + GFF621 0.57 -2.3 669,037 - GFF621 0.57 -1.1 669,288 + GFF621 0.78 -0.5 669,288 + GFF621 0.78 +1.6 669,289 - GFF621 0.78 +1.5 669,289 - GFF621 0.78 -1.5 669,417 + GFF621 0.89 -0.2 669,932 + GFF622 0.40 -3.1 669,933 - GFF622 0.40 +0.7 669,933 - GFF622 0.40 +1.3 669,933 - GFF622 0.40 +0.7 669,933 - GFF622 0.40 -0.3 669,989 + GFF622 0.45 -1.5 669,990 - GFF622 0.45 +0.7 670,106 + GFF622 0.57 -1.5 670,107 - GFF622 0.57 -0.8 670,107 - GFF622 0.57 -2.0 670,107 - GFF622 0.57 -2.5 670,107 - GFF622 0.57 -2.6 670,107 - GFF622 0.57 -0.3
Or see this region's nucleotide sequence