Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6160 and GFF6161 are separated by 19 nucleotides GFF6161 and GFF6162 overlap by 4 nucleotides
GFF6160 - Dehydrogenase molybdenum cofactor insertion protein, XdhC/CoxF family, at 65,911 to 66,933
GFF6160
GFF6161 - Hydroxymethylpyrimidine ABC transporter, ATPase component, at 66,953 to 67,756
GFF6161
GFF6162 - Dihydrodipicolinate synthase family protein RB7999, at 67,753 to 68,820
GFF6162
Position (kb) 66
67
68 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 66.109 kb on + strand, within GFF6160 at 66.109 kb on + strand, within GFF6160 at 66.173 kb on - strand, within GFF6160 at 66.454 kb on + strand, within GFF6160 at 66.683 kb on - strand, within GFF6160 at 66.683 kb on - strand, within GFF6160 at 66.683 kb on - strand, within GFF6160 at 66.796 kb on + strand, within GFF6160 at 66.796 kb on + strand, within GFF6160 at 66.796 kb on + strand, within GFF6160 at 66.796 kb on + strand, within GFF6160 at 66.797 kb on - strand, within GFF6160 at 66.797 kb on - strand, within GFF6160 at 66.797 kb on - strand, within GFF6160 at 66.975 kb on + strand at 66.975 kb on + strand at 66.975 kb on + strand at 66.975 kb on + strand at 66.975 kb on + strand at 66.976 kb on - strand at 66.976 kb on - strand at 66.976 kb on - strand at 66.976 kb on - strand at 66.990 kb on + strand at 66.990 kb on + strand at 66.991 kb on - strand at 67.311 kb on + strand, within GFF6161 at 67.312 kb on - strand, within GFF6161 at 67.312 kb on - strand, within GFF6161 at 67.677 kb on + strand at 67.678 kb on - strand at 67.820 kb on + strand at 67.820 kb on + strand at 67.821 kb on - strand at 67.822 kb on + strand at 67.822 kb on + strand at 67.823 kb on - strand at 67.823 kb on - strand at 68.122 kb on + strand, within GFF6162 at 68.122 kb on + strand, within GFF6162 at 68.122 kb on + strand, within GFF6162 at 68.122 kb on + strand, within GFF6162 at 68.123 kb on - strand, within GFF6162 at 68.370 kb on - strand, within GFF6162 at 68.475 kb on - strand, within GFF6162 at 68.606 kb on + strand, within GFF6162 at 68.607 kb on - strand, within GFF6162 at 68.684 kb on + strand, within GFF6162 at 68.685 kb on - strand, within GFF6162
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 66,109 + GFF6160 0.19 +0.8 66,109 + GFF6160 0.19 -0.6 66,173 - GFF6160 0.26 -0.4 66,454 + GFF6160 0.53 -0.6 66,683 - GFF6160 0.75 -1.2 66,683 - GFF6160 0.75 +0.7 66,683 - GFF6160 0.75 -0.6 66,796 + GFF6160 0.87 -1.0 66,796 + GFF6160 0.87 -1.3 66,796 + GFF6160 0.87 -0.7 66,796 + GFF6160 0.87 -1.0 66,797 - GFF6160 0.87 -3.6 66,797 - GFF6160 0.87 +0.1 66,797 - GFF6160 0.87 -3.7 66,975 + -1.3 66,975 + +1.7 66,975 + +1.2 66,975 + +1.6 66,975 + -0.9 66,976 - -1.8 66,976 - +0.6 66,976 - -0.7 66,976 - -0.3 66,990 + +2.0 66,990 + -1.3 66,991 - -3.4 67,311 + GFF6161 0.45 -1.6 67,312 - GFF6161 0.45 -0.9 67,312 - GFF6161 0.45 -1.3 67,677 + -1.7 67,678 - +2.7 67,820 + +0.2 67,820 + -0.6 67,821 - +4.7 67,822 + +0.7 67,822 + -0.9 67,823 - -3.6 67,823 - -0.6 68,122 + GFF6162 0.35 -0.7 68,122 + GFF6162 0.35 -0.2 68,122 + GFF6162 0.35 -0.2 68,122 + GFF6162 0.35 +0.5 68,123 - GFF6162 0.35 +0.2 68,370 - GFF6162 0.58 -2.9 68,475 - GFF6162 0.68 -2.0 68,606 + GFF6162 0.80 +2.3 68,607 - GFF6162 0.80 +0.4 68,684 + GFF6162 0.87 -0.3 68,685 - GFF6162 0.87 +1.4
Or see this region's nucleotide sequence