Strain Fitness in Variovorax sp. SCN45 around GFF6140

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6139 and GFF6140 are separated by 7 nucleotidesGFF6140 and GFF6141 are separated by 79 nucleotides GFF6139 - Serine/threonine kinase, at 41,302 to 42,588 GFF6139 GFF6140 - Uncharacterized MFS-type transporter Saci_1521, at 42,596 to 44,038 GFF6140 GFF6141 - 2-aminoethylphosphonate:pyruvate aminotransferase (EC 2.6.1.37), at 44,118 to 45,248 GFF6141 Position (kb) 42 43 44 45Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 41.713 kb on + strand, within GFF6139at 41.713 kb on + strand, within GFF6139at 41.713 kb on + strand, within GFF6139at 41.714 kb on - strand, within GFF6139at 41.714 kb on - strand, within GFF6139at 41.783 kb on - strand, within GFF6139at 41.783 kb on - strand, within GFF6139at 41.783 kb on - strand, within GFF6139at 41.788 kb on + strand, within GFF6139at 42.037 kb on + strand, within GFF6139at 42.037 kb on + strand, within GFF6139at 42.037 kb on + strand, within GFF6139at 42.037 kb on + strand, within GFF6139at 42.038 kb on - strand, within GFF6139at 42.038 kb on - strand, within GFF6139at 42.038 kb on - strand, within GFF6139at 42.038 kb on - strand, within GFF6139at 42.586 kb on + strandat 42.587 kb on - strandat 42.672 kb on + strandat 42.673 kb on - strandat 42.724 kb on - strandat 42.816 kb on + strand, within GFF6140at 42.816 kb on + strand, within GFF6140at 42.817 kb on - strand, within GFF6140at 42.817 kb on - strand, within GFF6140at 42.817 kb on - strand, within GFF6140at 42.817 kb on - strand, within GFF6140at 42.817 kb on - strand, within GFF6140at 42.876 kb on + strand, within GFF6140at 43.005 kb on + strand, within GFF6140at 43.005 kb on + strand, within GFF6140at 43.005 kb on + strand, within GFF6140at 43.005 kb on + strand, within GFF6140at 43.005 kb on + strand, within GFF6140at 43.005 kb on + strand, within GFF6140at 43.006 kb on - strand, within GFF6140at 43.006 kb on - strand, within GFF6140at 43.006 kb on - strand, within GFF6140at 43.006 kb on - strand, within GFF6140at 43.006 kb on - strand, within GFF6140at 43.101 kb on + strand, within GFF6140at 43.101 kb on + strand, within GFF6140at 43.101 kb on + strand, within GFF6140at 43.101 kb on + strand, within GFF6140at 43.102 kb on - strand, within GFF6140at 43.102 kb on - strand, within GFF6140at 43.102 kb on - strand, within GFF6140at 43.131 kb on + strand, within GFF6140at 43.132 kb on - strand, within GFF6140at 43.156 kb on - strand, within GFF6140at 43.156 kb on - strand, within GFF6140at 43.176 kb on + strand, within GFF6140at 43.176 kb on + strand, within GFF6140at 43.176 kb on + strand, within GFF6140at 43.293 kb on + strand, within GFF6140at 43.294 kb on - strand, within GFF6140at 43.741 kb on - strand, within GFF6140at 43.833 kb on + strand, within GFF6140at 43.833 kb on + strand, within GFF6140at 43.833 kb on + strand, within GFF6140at 44.030 kb on + strandat 44.049 kb on - strandat 44.076 kb on + strandat 44.076 kb on + strandat 44.267 kb on - strand, within GFF6141at 44.275 kb on + strand, within GFF6141at 44.275 kb on + strand, within GFF6141at 44.276 kb on - strand, within GFF6141at 44.276 kb on - strand, within GFF6141at 44.276 kb on - strand, within GFF6141at 44.299 kb on + strand, within GFF6141at 44.300 kb on - strand, within GFF6141at 44.317 kb on + strand, within GFF6141at 44.317 kb on + strand, within GFF6141at 44.437 kb on + strand, within GFF6141at 44.476 kb on + strand, within GFF6141at 44.476 kb on + strand, within GFF6141at 44.477 kb on - strand, within GFF6141at 44.477 kb on - strand, within GFF6141at 44.554 kb on + strand, within GFF6141at 44.554 kb on + strand, within GFF6141at 44.554 kb on + strand, within GFF6141at 44.554 kb on + strand, within GFF6141at 44.555 kb on - strand, within GFF6141at 44.555 kb on - strand, within GFF6141at 44.555 kb on - strand, within GFF6141at 44.555 kb on - strand, within GFF6141at 44.570 kb on - strand, within GFF6141at 44.915 kb on - strand, within GFF6141at 44.915 kb on - strand, within GFF6141at 44.975 kb on - strand, within GFF6141

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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41,713 + GFF6139 0.32 -0.1
41,713 + GFF6139 0.32 +0.0
41,713 + GFF6139 0.32 -1.0
41,714 - GFF6139 0.32 +1.1
41,714 - GFF6139 0.32 -0.3
41,783 - GFF6139 0.37 -0.6
41,783 - GFF6139 0.37 +1.7
41,783 - GFF6139 0.37 +0.6
41,788 + GFF6139 0.38 +1.1
42,037 + GFF6139 0.57 -0.2
42,037 + GFF6139 0.57 +1.2
42,037 + GFF6139 0.57 +1.4
42,037 + GFF6139 0.57 -2.0
42,038 - GFF6139 0.57 +0.8
42,038 - GFF6139 0.57 -1.3
42,038 - GFF6139 0.57 -1.3
42,038 - GFF6139 0.57 +3.4
42,586 + -0.0
42,587 - +0.7
42,672 + +2.1
42,673 - -0.3
42,724 - -0.9
42,816 + GFF6140 0.15 -2.8
42,816 + GFF6140 0.15 -1.9
42,817 - GFF6140 0.15 -0.7
42,817 - GFF6140 0.15 -0.6
42,817 - GFF6140 0.15 +0.8
42,817 - GFF6140 0.15 -1.2
42,817 - GFF6140 0.15 -2.1
42,876 + GFF6140 0.19 -1.1
43,005 + GFF6140 0.28 -2.8
43,005 + GFF6140 0.28 +0.9
43,005 + GFF6140 0.28 +0.4
43,005 + GFF6140 0.28 +0.1
43,005 + GFF6140 0.28 -4.0
43,005 + GFF6140 0.28 -2.3
43,006 - GFF6140 0.28 -0.5
43,006 - GFF6140 0.28 -3.3
43,006 - GFF6140 0.28 +0.2
43,006 - GFF6140 0.28 -3.2
43,006 - GFF6140 0.28 +0.8
43,101 + GFF6140 0.35 -1.6
43,101 + GFF6140 0.35 +2.8
43,101 + GFF6140 0.35 +0.1
43,101 + GFF6140 0.35 -0.3
43,102 - GFF6140 0.35 -0.6
43,102 - GFF6140 0.35 -0.3
43,102 - GFF6140 0.35 -2.0
43,131 + GFF6140 0.37 +1.1
43,132 - GFF6140 0.37 +0.8
43,156 - GFF6140 0.39 -0.3
43,156 - GFF6140 0.39 -3.0
43,176 + GFF6140 0.40 -2.9
43,176 + GFF6140 0.40 +0.7
43,176 + GFF6140 0.40 -2.1
43,293 + GFF6140 0.48 +0.7
43,294 - GFF6140 0.48 -0.3
43,741 - GFF6140 0.79 +1.4
43,833 + GFF6140 0.86 -0.7
43,833 + GFF6140 0.86 -4.3
43,833 + GFF6140 0.86 +2.3
44,030 + -1.8
44,049 - +0.1
44,076 + -2.9
44,076 + -0.7
44,267 - GFF6141 0.13 -1.5
44,275 + GFF6141 0.14 +1.2
44,275 + GFF6141 0.14 +0.8
44,276 - GFF6141 0.14 +0.1
44,276 - GFF6141 0.14 -2.0
44,276 - GFF6141 0.14 +1.5
44,299 + GFF6141 0.16 +0.9
44,300 - GFF6141 0.16 +0.4
44,317 + GFF6141 0.18 -1.8
44,317 + GFF6141 0.18 -1.0
44,437 + GFF6141 0.28 -2.2
44,476 + GFF6141 0.32 -0.4
44,476 + GFF6141 0.32 +2.9
44,477 - GFF6141 0.32 -2.2
44,477 - GFF6141 0.32 +0.6
44,554 + GFF6141 0.39 -0.3
44,554 + GFF6141 0.39 -0.9
44,554 + GFF6141 0.39 -2.4
44,554 + GFF6141 0.39 +0.5
44,555 - GFF6141 0.39 +0.8
44,555 - GFF6141 0.39 -0.9
44,555 - GFF6141 0.39 +0.6
44,555 - GFF6141 0.39 -0.6
44,570 - GFF6141 0.40 +2.9
44,915 - GFF6141 0.70 -1.6
44,915 - GFF6141 0.70 -0.4
44,975 - GFF6141 0.76 -0.1

Or see this region's nucleotide sequence