Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6122 and GFF6123 overlap by 4 nucleotides GFF6123 and GFF6124 are separated by 4 nucleotides GFF6124 and GFF6125 overlap by 4 nucleotides
GFF6122 - ABC-type antimicrobial peptide transport system, permease component, at 23,598 to 24,860
GFF6122
GFF6123 - ABC-type antimicrobial peptide transport system, ATPase component, at 24,857 to 25,603
GFF6123
GFF6124 - Predicted zinc-binding protein, at 25,608 to 26,186
GFF6124
GFF6125 - Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1), at 26,183 to 27,091
GFF6125
Position (kb) 24
25
26 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 24.074 kb on - strand, within GFF6122 at 24.074 kb on - strand, within GFF6122 at 24.502 kb on + strand, within GFF6122 at 24.652 kb on + strand, within GFF6122 at 24.652 kb on + strand, within GFF6122 at 24.652 kb on + strand, within GFF6122 at 24.652 kb on + strand, within GFF6122 at 25.308 kb on + strand, within GFF6123 at 25.309 kb on - strand, within GFF6123 at 25.309 kb on - strand, within GFF6123 at 26.250 kb on + strand at 26.250 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 24,074 - GFF6122 0.38 -3.8 24,074 - GFF6122 0.38 +3.1 24,502 + GFF6122 0.72 -0.7 24,652 + GFF6122 0.83 -2.5 24,652 + GFF6122 0.83 -1.3 24,652 + GFF6122 0.83 -1.3 24,652 + GFF6122 0.83 -0.9 25,308 + GFF6123 0.60 -0.6 25,309 - GFF6123 0.61 +0.4 25,309 - GFF6123 0.61 -1.2 26,250 + -2.2 26,250 + -3.4
Or see this region's nucleotide sequence