Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5906 and GFF5907 overlap by 38 nucleotides GFF5907 and GFF5908 are separated by 2 nucleotides GFF5908 and GFF5909 overlap by 4 nucleotides
GFF5906 - Nitrilase (EC 3.5.5.7), at 122,049 to 123,092
GFF5906
GFF5907 - Biotin synthase-related enzyme, at 123,055 to 124,137
GFF5907
GFF5908 - Histone acetyltransferase HPA2 and related acetyltransferases, at 124,140 to 124,700
GFF5908
GFF5909 - Selenophosphate synthetase-related protein MJ0640, at 124,697 to 125,704
GFF5909
Position (kb) 123
124
125 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 122.205 kb on + strand, within GFF5906 at 122.206 kb on - strand, within GFF5906 at 122.206 kb on - strand, within GFF5906 at 122.206 kb on - strand, within GFF5906 at 122.208 kb on + strand, within GFF5906 at 122.215 kb on - strand, within GFF5906 at 122.215 kb on - strand, within GFF5906 at 122.382 kb on + strand, within GFF5906 at 122.382 kb on + strand, within GFF5906 at 122.383 kb on - strand, within GFF5906 at 122.383 kb on - strand, within GFF5906 at 122.550 kb on + strand, within GFF5906 at 122.550 kb on + strand, within GFF5906 at 122.551 kb on - strand, within GFF5906 at 122.551 kb on - strand, within GFF5906 at 122.916 kb on + strand, within GFF5906 at 123.311 kb on - strand, within GFF5907 at 123.311 kb on - strand, within GFF5907 at 123.853 kb on + strand, within GFF5907 at 123.853 kb on + strand, within GFF5907 at 124.112 kb on + strand at 124.114 kb on + strand at 124.114 kb on + strand at 124.115 kb on - strand at 124.180 kb on - strand at 124.195 kb on - strand at 124.877 kb on + strand, within GFF5909 at 124.944 kb on - strand, within GFF5909 at 124.976 kb on + strand, within GFF5909 at 124.976 kb on + strand, within GFF5909 at 124.976 kb on + strand, within GFF5909 at 124.977 kb on - strand, within GFF5909 at 124.977 kb on - strand, within GFF5909 at 124.977 kb on - strand, within GFF5909
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 122,205 + GFF5906 0.15 +0.6 122,206 - GFF5906 0.15 -0.3 122,206 - GFF5906 0.15 -2.6 122,206 - GFF5906 0.15 +0.3 122,208 + GFF5906 0.15 +2.2 122,215 - GFF5906 0.16 +0.3 122,215 - GFF5906 0.16 +1.1 122,382 + GFF5906 0.32 -0.4 122,382 + GFF5906 0.32 -1.5 122,383 - GFF5906 0.32 -1.6 122,383 - GFF5906 0.32 -1.3 122,550 + GFF5906 0.48 +1.2 122,550 + GFF5906 0.48 +1.6 122,551 - GFF5906 0.48 +0.1 122,551 - GFF5906 0.48 +0.6 122,916 + GFF5906 0.83 +2.5 123,311 - GFF5907 0.24 +1.7 123,311 - GFF5907 0.24 -0.3 123,853 + GFF5907 0.74 +1.6 123,853 + GFF5907 0.74 +0.1 124,112 + -1.0 124,114 + +1.8 124,114 + +0.4 124,115 - +0.3 124,180 - -2.3 124,195 - -1.3 124,877 + GFF5909 0.18 -1.4 124,944 - GFF5909 0.25 -0.9 124,976 + GFF5909 0.28 -3.0 124,976 + GFF5909 0.28 -0.5 124,976 + GFF5909 0.28 +0.0 124,977 - GFF5909 0.28 -1.9 124,977 - GFF5909 0.28 +0.3 124,977 - GFF5909 0.28 +1.1
Or see this region's nucleotide sequence