Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5811 and GFF5812 are separated by 18 nucleotides GFF5812 and GFF5813 overlap by 4 nucleotides
GFF5811 - Multidrug efflux system MdtABC-TolC, inner-membrane proton/drug antiporter MdtB-like, at 187,702 to 190,872
GFF5811
GFF5812 - DNA-binding heavy metal response regulator, at 190,891 to 191,631
GFF5812
GFF5813 - Heavy metal sensor histidine kinase, at 191,628 to 193,025
GFF5813
Position (kb) 190
191
192 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 189.979 kb on + strand, within GFF5811 at 189.980 kb on - strand, within GFF5811 at 190.043 kb on - strand, within GFF5811 at 190.117 kb on + strand, within GFF5811 at 190.118 kb on - strand, within GFF5811 at 190.309 kb on + strand, within GFF5811 at 190.309 kb on + strand, within GFF5811 at 190.340 kb on - strand, within GFF5811 at 190.369 kb on + strand, within GFF5811 at 190.370 kb on - strand, within GFF5811 at 190.431 kb on - strand, within GFF5811 at 190.580 kb on - strand at 190.763 kb on - strand at 190.763 kb on - strand at 190.763 kb on - strand at 190.763 kb on - strand at 190.768 kb on + strand at 190.768 kb on + strand at 190.769 kb on - strand at 190.769 kb on - strand at 190.792 kb on + strand at 190.966 kb on + strand, within GFF5812 at 191.573 kb on - strand at 191.748 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 189,979 + GFF5811 0.72 -1.7 189,980 - GFF5811 0.72 -3.9 190,043 - GFF5811 0.74 -0.4 190,117 + GFF5811 0.76 -1.6 190,118 - GFF5811 0.76 +1.3 190,309 + GFF5811 0.82 +0.5 190,309 + GFF5811 0.82 -0.5 190,340 - GFF5811 0.83 +0.5 190,369 + GFF5811 0.84 +1.5 190,370 - GFF5811 0.84 -1.2 190,431 - GFF5811 0.86 -1.4 190,580 - +0.6 190,763 - -2.6 190,763 - -1.1 190,763 - -2.6 190,763 - -1.4 190,768 + +0.3 190,768 + -0.3 190,769 - -2.8 190,769 - -0.3 190,792 + -0.4 190,966 + GFF5812 0.10 +0.4 191,573 - -0.7 191,748 + +1.8
Or see this region's nucleotide sequence