Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5802 and GFF5803 are separated by 195 nucleotides GFF5803 and GFF5804 are separated by 130 nucleotides
GFF5802 - Urea ABC transporter, ATPase protein UrtD, at 177,854 to 178,732
GFF5802
GFF5803 - Urea ABC transporter, ATPase protein UrtE, at 178,928 to 179,620
GFF5803
GFF5804 - FIG00978734: hypothetical protein, at 179,751 to 181,004
GFF5804
Position (kb) 178
179
180 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 178.010 kb on + strand, within GFF5802 at 178.011 kb on - strand, within GFF5802 at 178.845 kb on + strand at 178.956 kb on - strand at 178.956 kb on - strand at 178.959 kb on - strand at 179.040 kb on + strand, within GFF5803 at 179.234 kb on + strand, within GFF5803 at 179.234 kb on + strand, within GFF5803 at 179.234 kb on + strand, within GFF5803 at 179.235 kb on - strand, within GFF5803 at 179.271 kb on - strand, within GFF5803 at 179.271 kb on - strand, within GFF5803 at 179.271 kb on - strand, within GFF5803 at 179.498 kb on + strand, within GFF5803 at 179.501 kb on + strand, within GFF5803 at 179.531 kb on + strand, within GFF5803 at 179.653 kb on + strand at 179.653 kb on + strand at 179.653 kb on + strand at 179.653 kb on + strand at 179.654 kb on - strand at 179.654 kb on - strand at 179.654 kb on - strand at 179.701 kb on + strand at 179.970 kb on + strand, within GFF5804 at 179.970 kb on + strand, within GFF5804 at 180.102 kb on + strand, within GFF5804 at 180.102 kb on + strand, within GFF5804 at 180.102 kb on + strand, within GFF5804 at 180.102 kb on + strand, within GFF5804 at 180.102 kb on + strand, within GFF5804 at 180.102 kb on + strand, within GFF5804 at 180.103 kb on - strand, within GFF5804 at 180.153 kb on + strand, within GFF5804 at 180.153 kb on + strand, within GFF5804 at 180.153 kb on + strand, within GFF5804 at 180.153 kb on + strand, within GFF5804 at 180.153 kb on + strand, within GFF5804 at 180.154 kb on - strand, within GFF5804 at 180.154 kb on - strand, within GFF5804 at 180.154 kb on - strand, within GFF5804 at 180.154 kb on - strand, within GFF5804 at 180.154 kb on - strand, within GFF5804 at 180.492 kb on + strand, within GFF5804 at 180.493 kb on - strand, within GFF5804 at 180.493 kb on - strand, within GFF5804 at 180.493 kb on - strand, within GFF5804
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 178,010 + GFF5802 0.18 -1.3 178,011 - GFF5802 0.18 -1.4 178,845 + +1.9 178,956 - -0.9 178,956 - +0.0 178,959 - -0.8 179,040 + GFF5803 0.16 -0.2 179,234 + GFF5803 0.44 -0.4 179,234 + GFF5803 0.44 -1.4 179,234 + GFF5803 0.44 -2.5 179,235 - GFF5803 0.44 +0.9 179,271 - GFF5803 0.49 -1.4 179,271 - GFF5803 0.49 -1.6 179,271 - GFF5803 0.49 +0.6 179,498 + GFF5803 0.82 +1.1 179,501 + GFF5803 0.83 +0.5 179,531 + GFF5803 0.87 -0.7 179,653 + +0.3 179,653 + +0.6 179,653 + +0.5 179,653 + -0.4 179,654 - -1.3 179,654 - +0.6 179,654 - +0.3 179,701 + +2.3 179,970 + GFF5804 0.17 -3.5 179,970 + GFF5804 0.17 +1.2 180,102 + GFF5804 0.28 -1.3 180,102 + GFF5804 0.28 -1.0 180,102 + GFF5804 0.28 +1.1 180,102 + GFF5804 0.28 +1.9 180,102 + GFF5804 0.28 +0.5 180,102 + GFF5804 0.28 -2.0 180,103 - GFF5804 0.28 +0.6 180,153 + GFF5804 0.32 +1.4 180,153 + GFF5804 0.32 -0.7 180,153 + GFF5804 0.32 -0.4 180,153 + GFF5804 0.32 -0.7 180,153 + GFF5804 0.32 -0.1 180,154 - GFF5804 0.32 -1.2 180,154 - GFF5804 0.32 -2.2 180,154 - GFF5804 0.32 -1.4 180,154 - GFF5804 0.32 +0.8 180,154 - GFF5804 0.32 -2.5 180,492 + GFF5804 0.59 -1.1 180,493 - GFF5804 0.59 -2.3 180,493 - GFF5804 0.59 +0.2 180,493 - GFF5804 0.59 -0.1
Or see this region's nucleotide sequence