Strain Fitness in Variovorax sp. SCN45 around GFF5596

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5595 and GFF5596 are separated by 3 nucleotidesGFF5596 and GFF5597 are separated by 166 nucleotidesGFF5597 and GFF5598 are separated by 33 nucleotides GFF5595 - no description, at 215,672 to 216,709 GFF5595 GFF5596 - Spermidine/putrescine import ABC transporter permease protein PotB (TC 3.A.1.11.1), at 216,713 to 217,546 GFF5596 GFF5597 - Two-component transcriptional response regulator, LuxR family, at 217,713 to 218,345 GFF5597 GFF5598 - putative phospholipase D family protein, at 218,379 to 219,659 GFF5598 Position (kb) 216 217 218Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 215.795 kb on + strand, within GFF5595at 216.071 kb on + strand, within GFF5595at 216.072 kb on - strand, within GFF5595at 216.072 kb on - strand, within GFF5595at 216.092 kb on + strand, within GFF5595at 216.092 kb on + strand, within GFF5595at 216.092 kb on + strand, within GFF5595at 216.092 kb on + strand, within GFF5595at 216.092 kb on + strand, within GFF5595at 216.093 kb on - strand, within GFF5595at 216.093 kb on - strand, within GFF5595at 216.093 kb on - strand, within GFF5595at 216.152 kb on + strand, within GFF5595at 216.152 kb on + strand, within GFF5595at 216.152 kb on + strand, within GFF5595at 216.153 kb on - strand, within GFF5595at 216.153 kb on - strand, within GFF5595at 216.153 kb on - strand, within GFF5595at 216.191 kb on + strand, within GFF5595at 216.191 kb on + strand, within GFF5595at 216.192 kb on - strand, within GFF5595at 216.192 kb on - strand, within GFF5595at 216.192 kb on - strand, within GFF5595at 216.371 kb on + strand, within GFF5595at 216.492 kb on - strand, within GFF5595at 216.492 kb on - strand, within GFF5595at 216.548 kb on + strand, within GFF5595at 216.548 kb on + strand, within GFF5595at 216.548 kb on + strand, within GFF5595at 216.549 kb on - strand, within GFF5595at 216.549 kb on - strand, within GFF5595at 216.650 kb on + strandat 216.683 kb on + strandat 216.684 kb on - strandat 216.788 kb on + strandat 216.803 kb on + strand, within GFF5596at 216.803 kb on + strand, within GFF5596at 216.804 kb on - strand, within GFF5596at 216.804 kb on - strand, within GFF5596at 216.848 kb on + strand, within GFF5596at 216.848 kb on + strand, within GFF5596at 216.848 kb on + strand, within GFF5596at 216.848 kb on + strand, within GFF5596at 216.848 kb on + strand, within GFF5596at 216.849 kb on - strand, within GFF5596at 216.849 kb on - strand, within GFF5596at 216.849 kb on - strand, within GFF5596at 216.849 kb on - strand, within GFF5596at 216.849 kb on - strand, within GFF5596at 216.849 kb on - strand, within GFF5596at 216.849 kb on - strand, within GFF5596at 216.872 kb on + strand, within GFF5596at 216.873 kb on - strand, within GFF5596at 216.873 kb on - strand, within GFF5596at 216.873 kb on - strand, within GFF5596at 216.885 kb on + strand, within GFF5596at 216.885 kb on + strand, within GFF5596at 216.885 kb on + strand, within GFF5596at 216.886 kb on - strand, within GFF5596at 216.886 kb on - strand, within GFF5596at 216.886 kb on - strand, within GFF5596at 216.886 kb on - strand, within GFF5596at 216.886 kb on - strand, within GFF5596at 216.956 kb on + strand, within GFF5596at 216.956 kb on + strand, within GFF5596at 216.957 kb on - strand, within GFF5596at 216.957 kb on - strand, within GFF5596at 217.358 kb on + strand, within GFF5596at 217.415 kb on + strand, within GFF5596at 217.415 kb on + strand, within GFF5596at 217.415 kb on + strand, within GFF5596at 217.415 kb on + strand, within GFF5596at 217.415 kb on + strand, within GFF5596at 217.415 kb on + strand, within GFF5596at 217.415 kb on + strand, within GFF5596at 217.415 kb on + strand, within GFF5596at 217.416 kb on - strand, within GFF5596at 217.416 kb on - strand, within GFF5596at 217.416 kb on - strand, within GFF5596at 217.416 kb on - strand, within GFF5596at 217.977 kb on + strand, within GFF5597at 218.013 kb on + strand, within GFF5597at 218.013 kb on + strand, within GFF5597at 218.013 kb on + strand, within GFF5597at 218.013 kb on + strand, within GFF5597at 218.014 kb on - strand, within GFF5597at 218.082 kb on + strand, within GFF5597at 218.082 kb on + strand, within GFF5597at 218.082 kb on + strand, within GFF5597at 218.083 kb on - strand, within GFF5597at 218.083 kb on - strand, within GFF5597at 218.083 kb on - strand, within GFF5597at 218.083 kb on - strand, within GFF5597at 218.083 kb on - strand, within GFF5597at 218.083 kb on - strand, within GFF5597at 218.083 kb on - strand, within GFF5597at 218.259 kb on + strand, within GFF5597at 218.259 kb on + strand, within GFF5597at 218.259 kb on + strand, within GFF5597at 218.260 kb on - strand, within GFF5597at 218.260 kb on - strand, within GFF5597at 218.260 kb on - strand, within GFF5597at 218.260 kb on - strand, within GFF5597at 218.313 kb on + strandat 218.314 kb on - strandat 218.314 kb on - strandat 218.314 kb on - strandat 218.314 kb on - strandat 218.316 kb on + strandat 218.316 kb on + strandat 218.316 kb on + strandat 218.317 kb on - strandat 218.317 kb on - strandat 218.317 kb on - strandat 218.502 kb on + strandat 218.503 kb on - strandat 218.523 kb on + strand, within GFF5598at 218.523 kb on + strand, within GFF5598at 218.524 kb on - strand, within GFF5598

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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215,795 + GFF5595 0.12 +0.7
216,071 + GFF5595 0.38 +1.0
216,072 - GFF5595 0.39 +0.3
216,072 - GFF5595 0.39 -1.7
216,092 + GFF5595 0.40 -2.2
216,092 + GFF5595 0.40 +0.6
216,092 + GFF5595 0.40 -3.4
216,092 + GFF5595 0.40 +2.0
216,092 + GFF5595 0.40 -1.8
216,093 - GFF5595 0.41 -1.4
216,093 - GFF5595 0.41 +1.8
216,093 - GFF5595 0.41 -2.0
216,152 + GFF5595 0.46 +0.9
216,152 + GFF5595 0.46 -0.0
216,152 + GFF5595 0.46 +2.7
216,153 - GFF5595 0.46 +0.3
216,153 - GFF5595 0.46 -2.7
216,153 - GFF5595 0.46 +1.1
216,191 + GFF5595 0.50 -1.1
216,191 + GFF5595 0.50 +0.1
216,192 - GFF5595 0.50 +1.3
216,192 - GFF5595 0.50 -0.1
216,192 - GFF5595 0.50 -1.2
216,371 + GFF5595 0.67 -3.1
216,492 - GFF5595 0.79 +1.8
216,492 - GFF5595 0.79 +0.9
216,548 + GFF5595 0.84 -2.3
216,548 + GFF5595 0.84 +0.7
216,548 + GFF5595 0.84 -0.1
216,549 - GFF5595 0.84 -2.7
216,549 - GFF5595 0.84 -2.0
216,650 + -3.0
216,683 + +0.4
216,684 - -0.1
216,788 + -2.3
216,803 + GFF5596 0.11 +0.9
216,803 + GFF5596 0.11 +1.9
216,804 - GFF5596 0.11 +2.8
216,804 - GFF5596 0.11 -0.1
216,848 + GFF5596 0.16 +0.2
216,848 + GFF5596 0.16 +0.4
216,848 + GFF5596 0.16 -2.4
216,848 + GFF5596 0.16 -0.7
216,848 + GFF5596 0.16 +0.3
216,849 - GFF5596 0.16 +1.5
216,849 - GFF5596 0.16 -1.1
216,849 - GFF5596 0.16 -3.9
216,849 - GFF5596 0.16 +1.0
216,849 - GFF5596 0.16 +1.1
216,849 - GFF5596 0.16 +1.3
216,849 - GFF5596 0.16 -1.7
216,872 + GFF5596 0.19 -2.6
216,873 - GFF5596 0.19 +1.5
216,873 - GFF5596 0.19 -0.4
216,873 - GFF5596 0.19 +0.0
216,885 + GFF5596 0.21 -0.2
216,885 + GFF5596 0.21 -3.0
216,885 + GFF5596 0.21 -0.4
216,886 - GFF5596 0.21 -0.4
216,886 - GFF5596 0.21 +0.9
216,886 - GFF5596 0.21 -0.3
216,886 - GFF5596 0.21 -1.0
216,886 - GFF5596 0.21 -0.4
216,956 + GFF5596 0.29 +0.8
216,956 + GFF5596 0.29 -1.9
216,957 - GFF5596 0.29 +1.5
216,957 - GFF5596 0.29 +0.1
217,358 + GFF5596 0.77 -3.2
217,415 + GFF5596 0.84 -1.3
217,415 + GFF5596 0.84 -1.3
217,415 + GFF5596 0.84 +0.7
217,415 + GFF5596 0.84 +3.1
217,415 + GFF5596 0.84 +1.9
217,415 + GFF5596 0.84 +1.6
217,415 + GFF5596 0.84 +0.7
217,415 + GFF5596 0.84 -0.5
217,416 - GFF5596 0.84 -0.5
217,416 - GFF5596 0.84 -2.0
217,416 - GFF5596 0.84 -3.7
217,416 - GFF5596 0.84 +0.9
217,977 + GFF5597 0.42 +0.0
218,013 + GFF5597 0.47 +0.2
218,013 + GFF5597 0.47 -0.0
218,013 + GFF5597 0.47 -1.6
218,013 + GFF5597 0.47 -0.1
218,014 - GFF5597 0.48 -0.4
218,082 + GFF5597 0.58 -0.1
218,082 + GFF5597 0.58 +0.2
218,082 + GFF5597 0.58 +0.2
218,083 - GFF5597 0.58 +0.7
218,083 - GFF5597 0.58 -0.2
218,083 - GFF5597 0.58 -0.9
218,083 - GFF5597 0.58 -0.1
218,083 - GFF5597 0.58 +1.7
218,083 - GFF5597 0.58 +0.3
218,083 - GFF5597 0.58 -0.8
218,259 + GFF5597 0.86 +1.2
218,259 + GFF5597 0.86 -3.3
218,259 + GFF5597 0.86 -0.4
218,260 - GFF5597 0.86 -0.4
218,260 - GFF5597 0.86 -0.6
218,260 - GFF5597 0.86 -0.6
218,260 - GFF5597 0.86 -2.6
218,313 + +0.3
218,314 - -1.3
218,314 - -1.1
218,314 - -2.0
218,314 - -1.7
218,316 + -0.3
218,316 + -1.5
218,316 + -0.3
218,317 - +0.3
218,317 - +0.4
218,317 - -1.8
218,502 + +0.3
218,503 - +0.2
218,523 + GFF5598 0.11 -0.4
218,523 + GFF5598 0.11 +1.6
218,524 - GFF5598 0.11 -2.7

Or see this region's nucleotide sequence