Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5352 and GFF5353 are separated by 21 nucleotides GFF5353 and GFF5354 overlap by 4 nucleotides GFF5354 and GFF5355 are separated by 60 nucleotides GFF5355 and GFF5356 are separated by 7 nucleotides GFF5356 and GFF5357 are separated by 19 nucleotides
GFF5352 - Split AAA-ATPase protein PA0787, at 229,165 to 230,337
GFF5352
GFF5353 - Glutamate/aspartate ABC transporter, substrate-binding protein GltI (TC 3.A.1.3.4), at 230,359 to 231,267
GFF5353
GFF5354 - C4-dicarboxylate transport protein, at 231,264 to 232,571
GFF5354
GFF5355 - no description, at 232,632 to 232,772
GFF5355
GFF5356 - Aldose 1-epimerase, at 232,780 to 233,538
GFF5356
GFF5357 - Imidazole glycerol phosphate synthase cyclase subunit, at 233,558 to 234,337
GFF5357
Position (kb) 231
232
233 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 230.360 kb on + strand at 230.360 kb on + strand at 230.360 kb on + strand at 230.361 kb on - strand at 230.361 kb on - strand at 230.361 kb on - strand at 230.465 kb on + strand, within GFF5353 at 230.465 kb on + strand, within GFF5353 at 230.465 kb on + strand, within GFF5353 at 230.465 kb on + strand, within GFF5353 at 230.465 kb on + strand, within GFF5353 at 230.466 kb on - strand, within GFF5353 at 230.466 kb on - strand, within GFF5353 at 230.466 kb on - strand, within GFF5353 at 230.549 kb on + strand, within GFF5353 at 230.549 kb on + strand, within GFF5353 at 230.550 kb on - strand, within GFF5353 at 230.550 kb on - strand, within GFF5353 at 230.550 kb on - strand, within GFF5353 at 230.550 kb on - strand, within GFF5353 at 230.550 kb on - strand, within GFF5353 at 230.570 kb on + strand, within GFF5353 at 230.570 kb on + strand, within GFF5353 at 230.570 kb on + strand, within GFF5353 at 230.570 kb on + strand, within GFF5353 at 230.570 kb on + strand, within GFF5353 at 230.570 kb on + strand, within GFF5353 at 230.571 kb on - strand, within GFF5353 at 230.571 kb on - strand, within GFF5353 at 230.571 kb on - strand, within GFF5353 at 230.571 kb on - strand, within GFF5353 at 230.634 kb on - strand, within GFF5353 at 230.634 kb on - strand, within GFF5353 at 231.065 kb on + strand, within GFF5353 at 231.066 kb on - strand, within GFF5353 at 231.601 kb on + strand, within GFF5354 at 231.601 kb on + strand, within GFF5354 at 231.601 kb on + strand, within GFF5354 at 231.601 kb on + strand, within GFF5354 at 231.601 kb on + strand, within GFF5354 at 231.601 kb on + strand, within GFF5354 at 231.602 kb on - strand, within GFF5354 at 231.602 kb on - strand, within GFF5354 at 231.602 kb on - strand, within GFF5354 at 231.637 kb on + strand, within GFF5354 at 231.637 kb on + strand, within GFF5354 at 231.637 kb on + strand, within GFF5354 at 231.637 kb on + strand, within GFF5354 at 231.637 kb on + strand, within GFF5354 at 231.637 kb on + strand, within GFF5354 at 231.637 kb on + strand, within GFF5354 at 231.637 kb on + strand, within GFF5354 at 231.637 kb on + strand, within GFF5354 at 231.637 kb on + strand, within GFF5354 at 231.637 kb on + strand, within GFF5354 at 231.637 kb on + strand, within GFF5354 at 231.637 kb on + strand, within GFF5354 at 231.637 kb on + strand, within GFF5354 at 231.637 kb on + strand, within GFF5354 at 231.638 kb on - strand, within GFF5354 at 231.638 kb on - strand, within GFF5354 at 231.638 kb on - strand, within GFF5354 at 231.638 kb on - strand, within GFF5354 at 231.638 kb on - strand, within GFF5354 at 231.638 kb on - strand, within GFF5354 at 231.638 kb on - strand, within GFF5354 at 231.638 kb on - strand, within GFF5354 at 231.638 kb on - strand, within GFF5354 at 231.638 kb on - strand, within GFF5354 at 231.638 kb on - strand, within GFF5354 at 231.638 kb on - strand, within GFF5354 at 231.638 kb on - strand, within GFF5354 at 231.638 kb on - strand, within GFF5354 at 231.638 kb on - strand, within GFF5354 at 231.638 kb on - strand, within GFF5354 at 231.668 kb on - strand, within GFF5354 at 231.742 kb on + strand, within GFF5354 at 231.743 kb on - strand, within GFF5354 at 231.743 kb on - strand, within GFF5354 at 231.743 kb on - strand, within GFF5354 at 231.880 kb on + strand, within GFF5354 at 231.880 kb on + strand, within GFF5354 at 231.880 kb on + strand, within GFF5354 at 231.880 kb on + strand, within GFF5354 at 231.880 kb on + strand, within GFF5354 at 231.881 kb on - strand, within GFF5354 at 231.881 kb on - strand, within GFF5354 at 231.881 kb on - strand, within GFF5354 at 231.881 kb on - strand, within GFF5354 at 231.881 kb on - strand, within GFF5354 at 231.988 kb on + strand, within GFF5354 at 231.989 kb on - strand, within GFF5354 at 232.450 kb on + strand at 232.450 kb on + strand at 232.451 kb on - strand at 232.451 kb on - strand at 232.451 kb on - strand at 232.504 kb on + strand at 232.504 kb on + strand at 232.504 kb on + strand at 232.504 kb on + strand at 232.504 kb on + strand at 232.504 kb on + strand at 232.504 kb on + strand at 232.504 kb on + strand at 232.505 kb on - strand at 232.505 kb on - strand at 232.505 kb on - strand at 232.505 kb on - strand at 232.505 kb on - strand at 232.505 kb on - strand at 232.575 kb on + strand at 232.576 kb on - strand at 232.592 kb on + strand at 232.592 kb on + strand at 232.592 kb on + strand at 232.592 kb on + strand at 232.592 kb on + strand at 232.592 kb on + strand at 232.592 kb on + strand at 232.592 kb on + strand at 232.593 kb on - strand at 232.593 kb on - strand at 232.593 kb on - strand at 232.593 kb on - strand at 232.593 kb on - strand at 232.598 kb on + strand at 232.598 kb on + strand at 232.598 kb on + strand at 232.598 kb on + strand at 232.598 kb on + strand at 232.598 kb on + strand at 232.598 kb on + strand at 232.599 kb on - strand at 232.599 kb on - strand at 232.599 kb on - strand at 232.599 kb on - strand at 232.599 kb on - strand at 232.599 kb on - strand at 232.599 kb on - strand at 232.692 kb on + strand, within GFF5355 at 232.692 kb on + strand, within GFF5355 at 232.692 kb on + strand, within GFF5355 at 232.692 kb on + strand, within GFF5355 at 232.693 kb on - strand, within GFF5355 at 232.693 kb on - strand, within GFF5355 at 232.693 kb on - strand, within GFF5355 at 232.693 kb on - strand, within GFF5355 at 232.770 kb on + strand at 232.771 kb on - strand at 232.771 kb on - strand at 232.771 kb on - strand at 232.771 kb on - strand at 232.802 kb on + strand at 232.802 kb on + strand at 232.802 kb on + strand at 232.802 kb on + strand at 232.802 kb on + strand at 232.802 kb on + strand at 232.802 kb on + strand at 232.803 kb on - strand at 232.803 kb on - strand at 232.803 kb on - strand at 232.803 kb on - strand at 232.803 kb on - strand at 232.803 kb on - strand at 232.803 kb on - strand at 232.840 kb on + strand at 232.840 kb on + strand at 232.840 kb on + strand at 232.840 kb on + strand at 232.898 kb on + strand, within GFF5356 at 232.898 kb on + strand, within GFF5356 at 232.898 kb on + strand, within GFF5356 at 232.899 kb on - strand, within GFF5356 at 232.899 kb on - strand, within GFF5356 at 232.899 kb on - strand, within GFF5356 at 232.899 kb on - strand, within GFF5356 at 232.899 kb on - strand, within GFF5356 at 233.116 kb on - strand, within GFF5356 at 233.158 kb on + strand, within GFF5356 at 233.158 kb on + strand, within GFF5356 at 233.158 kb on + strand, within GFF5356 at 233.158 kb on + strand, within GFF5356 at 233.158 kb on + strand, within GFF5356 at 233.158 kb on + strand, within GFF5356 at 233.158 kb on + strand, within GFF5356 at 233.158 kb on + strand, within GFF5356 at 233.158 kb on + strand, within GFF5356 at 233.159 kb on - strand, within GFF5356 at 233.159 kb on - strand, within GFF5356 at 233.159 kb on - strand, within GFF5356 at 233.159 kb on - strand, within GFF5356 at 233.159 kb on - strand, within GFF5356 at 233.159 kb on - strand, within GFF5356 at 233.159 kb on - strand, within GFF5356 at 233.159 kb on - strand, within GFF5356 at 233.159 kb on - strand, within GFF5356 at 233.159 kb on - strand, within GFF5356 at 233.159 kb on - strand, within GFF5356 at 233.159 kb on - strand, within GFF5356 at 233.159 kb on - strand, within GFF5356 at 233.159 kb on - strand, within GFF5356 at 233.159 kb on - strand, within GFF5356 at 233.294 kb on - strand, within GFF5356 at 233.294 kb on - strand, within GFF5356 at 233.294 kb on - strand, within GFF5356
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 230,360 + -1.5 230,360 + -1.8 230,360 + -0.7 230,361 - +0.6 230,361 - +0.2 230,361 - +0.6 230,465 + GFF5353 0.12 -1.4 230,465 + GFF5353 0.12 -0.1 230,465 + GFF5353 0.12 -2.5 230,465 + GFF5353 0.12 +1.3 230,465 + GFF5353 0.12 +0.6 230,466 - GFF5353 0.12 -1.4 230,466 - GFF5353 0.12 -0.7 230,466 - GFF5353 0.12 +1.5 230,549 + GFF5353 0.21 -1.1 230,549 + GFF5353 0.21 -0.3 230,550 - GFF5353 0.21 -0.1 230,550 - GFF5353 0.21 -4.8 230,550 - GFF5353 0.21 -2.5 230,550 - GFF5353 0.21 -0.7 230,550 - GFF5353 0.21 -2.5 230,570 + GFF5353 0.23 +0.6 230,570 + GFF5353 0.23 -1.8 230,570 + GFF5353 0.23 -2.1 230,570 + GFF5353 0.23 +2.2 230,570 + GFF5353 0.23 -1.4 230,570 + GFF5353 0.23 -2.5 230,571 - GFF5353 0.23 -2.3 230,571 - GFF5353 0.23 +1.9 230,571 - GFF5353 0.23 -1.3 230,571 - GFF5353 0.23 -1.6 230,634 - GFF5353 0.30 -0.6 230,634 - GFF5353 0.30 -1.7 231,065 + GFF5353 0.78 +0.3 231,066 - GFF5353 0.78 +1.0 231,601 + GFF5354 0.26 +2.7 231,601 + GFF5354 0.26 +0.7 231,601 + GFF5354 0.26 +1.9 231,601 + GFF5354 0.26 -1.7 231,601 + GFF5354 0.26 -1.3 231,601 + GFF5354 0.26 +0.8 231,602 - GFF5354 0.26 -1.1 231,602 - GFF5354 0.26 -1.7 231,602 - GFF5354 0.26 -0.2 231,637 + GFF5354 0.29 -2.3 231,637 + GFF5354 0.29 +1.4 231,637 + GFF5354 0.29 +0.9 231,637 + GFF5354 0.29 +1.6 231,637 + GFF5354 0.29 -1.0 231,637 + GFF5354 0.29 -0.7 231,637 + GFF5354 0.29 +0.2 231,637 + GFF5354 0.29 +0.2 231,637 + GFF5354 0.29 -1.5 231,637 + GFF5354 0.29 +0.7 231,637 + GFF5354 0.29 -1.1 231,637 + GFF5354 0.29 -2.4 231,637 + GFF5354 0.29 +3.4 231,637 + GFF5354 0.29 -0.1 231,637 + GFF5354 0.29 -0.2 231,638 - GFF5354 0.29 -1.1 231,638 - GFF5354 0.29 +1.6 231,638 - GFF5354 0.29 -1.1 231,638 - GFF5354 0.29 +1.9 231,638 - GFF5354 0.29 -0.2 231,638 - GFF5354 0.29 +0.5 231,638 - GFF5354 0.29 +0.6 231,638 - GFF5354 0.29 -0.5 231,638 - GFF5354 0.29 +0.2 231,638 - GFF5354 0.29 -1.0 231,638 - GFF5354 0.29 -0.7 231,638 - GFF5354 0.29 +0.3 231,638 - GFF5354 0.29 +1.3 231,638 - GFF5354 0.29 +0.4 231,638 - GFF5354 0.29 +0.0 231,638 - GFF5354 0.29 +2.0 231,668 - GFF5354 0.31 -1.1 231,742 + GFF5354 0.37 +2.7 231,743 - GFF5354 0.37 -0.3 231,743 - GFF5354 0.37 +0.5 231,743 - GFF5354 0.37 -2.8 231,880 + GFF5354 0.47 +1.2 231,880 + GFF5354 0.47 +1.3 231,880 + GFF5354 0.47 -0.4 231,880 + GFF5354 0.47 -0.5 231,880 + GFF5354 0.47 -2.8 231,881 - GFF5354 0.47 -0.9 231,881 - GFF5354 0.47 -1.0 231,881 - GFF5354 0.47 +1.9 231,881 - GFF5354 0.47 +1.1 231,881 - GFF5354 0.47 +0.3 231,988 + GFF5354 0.55 -0.7 231,989 - GFF5354 0.55 -1.1 232,450 + +0.0 232,450 + -1.2 232,451 - -3.4 232,451 - +0.2 232,451 - -1.2 232,504 + -1.2 232,504 + +0.0 232,504 + -1.1 232,504 + -0.6 232,504 + -2.6 232,504 + -1.8 232,504 + -1.0 232,504 + -2.7 232,505 - +0.3 232,505 - -1.5 232,505 - -2.5 232,505 - +1.4 232,505 - -2.0 232,505 - -1.1 232,575 + +1.8 232,576 - +0.3 232,592 + -3.4 232,592 + +0.2 232,592 + -2.0 232,592 + -0.7 232,592 + -0.6 232,592 + +1.5 232,592 + -0.7 232,592 + -0.5 232,593 - -1.4 232,593 - +1.1 232,593 - +1.5 232,593 - -0.3 232,593 - +0.2 232,598 + +0.3 232,598 + +0.2 232,598 + -0.7 232,598 + +1.0 232,598 + -1.6 232,598 + +0.7 232,598 + -1.0 232,599 - -2.7 232,599 - +0.8 232,599 - +0.3 232,599 - +1.2 232,599 - -1.1 232,599 - -2.6 232,599 - +0.4 232,692 + GFF5355 0.43 -0.5 232,692 + GFF5355 0.43 -3.1 232,692 + GFF5355 0.43 +0.8 232,692 + GFF5355 0.43 -0.6 232,693 - GFF5355 0.43 -2.9 232,693 - GFF5355 0.43 -2.2 232,693 - GFF5355 0.43 +2.0 232,693 - GFF5355 0.43 +0.1 232,770 + +1.6 232,771 - -2.3 232,771 - +0.7 232,771 - +0.4 232,771 - -1.7 232,802 + -2.2 232,802 + +2.0 232,802 + -2.2 232,802 + +0.3 232,802 + -1.3 232,802 + +0.4 232,802 + +0.0 232,803 - -1.1 232,803 - +1.5 232,803 - -3.0 232,803 - -4.1 232,803 - -0.1 232,803 - -1.1 232,803 - -1.3 232,840 + +0.5 232,840 + -0.6 232,840 + +0.3 232,840 + +1.4 232,898 + GFF5356 0.16 -0.5 232,898 + GFF5356 0.16 +1.1 232,898 + GFF5356 0.16 -1.6 232,899 - GFF5356 0.16 +1.2 232,899 - GFF5356 0.16 +0.2 232,899 - GFF5356 0.16 -0.7 232,899 - GFF5356 0.16 +0.0 232,899 - GFF5356 0.16 -0.3 233,116 - GFF5356 0.44 -0.1 233,158 + GFF5356 0.50 +1.4 233,158 + GFF5356 0.50 -2.4 233,158 + GFF5356 0.50 -2.0 233,158 + GFF5356 0.50 -1.9 233,158 + GFF5356 0.50 +1.9 233,158 + GFF5356 0.50 -2.1 233,158 + GFF5356 0.50 -0.4 233,158 + GFF5356 0.50 -0.3 233,158 + GFF5356 0.50 +0.4 233,159 - GFF5356 0.50 -0.8 233,159 - GFF5356 0.50 +1.1 233,159 - GFF5356 0.50 -0.3 233,159 - GFF5356 0.50 +1.7 233,159 - GFF5356 0.50 -3.4 233,159 - GFF5356 0.50 +2.0 233,159 - GFF5356 0.50 +0.3 233,159 - GFF5356 0.50 +0.6 233,159 - GFF5356 0.50 -1.3 233,159 - GFF5356 0.50 +2.8 233,159 - GFF5356 0.50 +0.1 233,159 - GFF5356 0.50 -0.7 233,159 - GFF5356 0.50 +1.9 233,159 - GFF5356 0.50 -1.0 233,159 - GFF5356 0.50 +0.7 233,294 - GFF5356 0.68 +1.9 233,294 - GFF5356 0.68 +1.1 233,294 - GFF5356 0.68 +1.3
Or see this region's nucleotide sequence