Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5279 and GFF5280 are separated by 11 nucleotides GFF5280 and GFF5281 are separated by 26 nucleotides
GFF5279 - Fructokinase (EC 2.7.1.4), at 147,379 to 148,347
GFF5279
GFF5280 - Transcriptional regulator of various polyols utilization, AraC family, at 148,359 to 149,315
GFF5280
GFF5281 - Xylulose kinase (EC 2.7.1.17), at 149,342 to 150,808
GFF5281
Position (kb) 148
149
150 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 147.661 kb on + strand, within GFF5279 at 147.662 kb on - strand, within GFF5279 at 147.670 kb on + strand, within GFF5279 at 147.670 kb on + strand, within GFF5279 at 147.670 kb on + strand, within GFF5279 at 147.670 kb on + strand, within GFF5279 at 147.670 kb on + strand, within GFF5279 at 147.671 kb on - strand, within GFF5279 at 147.671 kb on - strand, within GFF5279 at 147.671 kb on - strand, within GFF5279 at 147.671 kb on - strand, within GFF5279 at 147.671 kb on - strand, within GFF5279 at 147.880 kb on + strand, within GFF5279 at 148.074 kb on + strand, within GFF5279 at 148.074 kb on + strand, within GFF5279 at 148.075 kb on - strand, within GFF5279 at 148.075 kb on - strand, within GFF5279 at 148.323 kb on + strand at 148.324 kb on - strand at 148.324 kb on - strand at 148.447 kb on - strand at 148.533 kb on + strand, within GFF5280 at 148.533 kb on + strand, within GFF5280 at 148.533 kb on + strand, within GFF5280 at 148.533 kb on + strand, within GFF5280 at 148.534 kb on - strand, within GFF5280 at 148.534 kb on - strand, within GFF5280 at 148.534 kb on - strand, within GFF5280 at 149.175 kb on + strand, within GFF5280 at 149.175 kb on + strand, within GFF5280 at 149.175 kb on + strand, within GFF5280 at 149.175 kb on + strand, within GFF5280 at 149.175 kb on + strand, within GFF5280 at 149.175 kb on + strand, within GFF5280 at 149.176 kb on - strand, within GFF5280 at 149.176 kb on - strand, within GFF5280 at 149.176 kb on - strand, within GFF5280 at 149.176 kb on - strand, within GFF5280 at 149.193 kb on + strand, within GFF5280 at 149.313 kb on + strand at 149.313 kb on + strand at 149.313 kb on + strand at 149.313 kb on + strand at 149.313 kb on + strand at 149.313 kb on + strand at 149.314 kb on - strand at 149.314 kb on - strand at 149.314 kb on - strand at 149.317 kb on + strand at 149.317 kb on + strand at 149.317 kb on + strand at 149.317 kb on + strand at 149.317 kb on + strand at 149.317 kb on + strand at 149.318 kb on - strand at 149.318 kb on - strand at 149.318 kb on - strand at 149.318 kb on - strand at 149.318 kb on - strand at 149.318 kb on - strand at 149.345 kb on + strand at 149.345 kb on + strand at 149.346 kb on - strand at 149.346 kb on - strand at 149.346 kb on - strand at 149.346 kb on - strand at 149.782 kb on + strand, within GFF5281
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 147,661 + GFF5279 0.29 -1.2 147,662 - GFF5279 0.29 -1.0 147,670 + GFF5279 0.30 -0.5 147,670 + GFF5279 0.30 +0.5 147,670 + GFF5279 0.30 +0.7 147,670 + GFF5279 0.30 -1.8 147,670 + GFF5279 0.30 -2.6 147,671 - GFF5279 0.30 +0.6 147,671 - GFF5279 0.30 -1.5 147,671 - GFF5279 0.30 -0.5 147,671 - GFF5279 0.30 +1.5 147,671 - GFF5279 0.30 +0.3 147,880 + GFF5279 0.52 -4.9 148,074 + GFF5279 0.72 -1.7 148,074 + GFF5279 0.72 -1.0 148,075 - GFF5279 0.72 +0.4 148,075 - GFF5279 0.72 -1.6 148,323 + -4.3 148,324 - +2.4 148,324 - -2.5 148,447 - +0.9 148,533 + GFF5280 0.18 +1.3 148,533 + GFF5280 0.18 +0.6 148,533 + GFF5280 0.18 +0.9 148,533 + GFF5280 0.18 -1.5 148,534 - GFF5280 0.18 +0.2 148,534 - GFF5280 0.18 -0.8 148,534 - GFF5280 0.18 -1.5 149,175 + GFF5280 0.85 -1.3 149,175 + GFF5280 0.85 +0.5 149,175 + GFF5280 0.85 +1.0 149,175 + GFF5280 0.85 -0.5 149,175 + GFF5280 0.85 +0.6 149,175 + GFF5280 0.85 -3.4 149,176 - GFF5280 0.85 +0.9 149,176 - GFF5280 0.85 -0.5 149,176 - GFF5280 0.85 +2.0 149,176 - GFF5280 0.85 +2.0 149,193 + GFF5280 0.87 +0.5 149,313 + -2.4 149,313 + +1.9 149,313 + -1.1 149,313 + -3.4 149,313 + -3.2 149,313 + -2.5 149,314 - -0.7 149,314 - -1.1 149,314 - -2.7 149,317 + -2.1 149,317 + -2.1 149,317 + +0.3 149,317 + +1.3 149,317 + -2.4 149,317 + -0.4 149,318 - -2.4 149,318 - -0.8 149,318 - -0.5 149,318 - +1.7 149,318 - -2.2 149,318 - -0.5 149,345 + +0.1 149,345 + -1.0 149,346 - -0.2 149,346 - -1.6 149,346 - +0.1 149,346 - +0.6 149,782 + GFF5281 0.30 +0.4
Or see this region's nucleotide sequence