Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5211 and GFF5212 are separated by 32 nucleotides GFF5212 and GFF5213 are separated by 193 nucleotides GFF5213 and GFF5214 are separated by 79 nucleotides
GFF5211 - Alkaline phosphatase (EC 3.1.3.1), at 73,028 to 74,566
GFF5211
GFF5212 - Alkaline phosphatase (EC 3.1.3.1), at 74,599 to 76,062
GFF5212
GFF5213 - hypothetical protein, at 76,256 to 76,666
GFF5213
GFF5214 - 7-cyano-7-deazaguanine synthase (EC 6.3.4.20), at 76,746 to 77,450
GFF5214
Position (kb) 74
75
76
77 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 73.722 kb on + strand, within GFF5211 at 73.809 kb on + strand, within GFF5211 at 73.810 kb on - strand, within GFF5211 at 73.894 kb on - strand, within GFF5211 at 73.951 kb on - strand, within GFF5211 at 73.992 kb on + strand, within GFF5211 at 74.020 kb on - strand, within GFF5211 at 74.160 kb on + strand, within GFF5211 at 74.161 kb on - strand, within GFF5211 at 74.161 kb on - strand, within GFF5211 at 74.161 kb on - strand, within GFF5211 at 74.241 kb on + strand, within GFF5211 at 74.762 kb on + strand, within GFF5212 at 74.762 kb on + strand, within GFF5212 at 74.762 kb on + strand, within GFF5212 at 74.763 kb on - strand, within GFF5212 at 74.847 kb on - strand, within GFF5212 at 74.891 kb on + strand, within GFF5212 at 74.891 kb on + strand, within GFF5212 at 75.242 kb on + strand, within GFF5212 at 75.242 kb on + strand, within GFF5212 at 75.329 kb on + strand, within GFF5212 at 75.330 kb on - strand, within GFF5212 at 75.330 kb on - strand, within GFF5212 at 75.335 kb on + strand, within GFF5212 at 75.410 kb on + strand, within GFF5212 at 75.662 kb on + strand, within GFF5212 at 75.663 kb on - strand, within GFF5212 at 75.675 kb on - strand, within GFF5212 at 75.803 kb on + strand, within GFF5212 at 75.803 kb on + strand, within GFF5212 at 75.803 kb on + strand, within GFF5212 at 75.803 kb on + strand, within GFF5212 at 75.804 kb on - strand, within GFF5212 at 75.869 kb on + strand, within GFF5212 at 75.870 kb on - strand, within GFF5212 at 75.870 kb on - strand, within GFF5212 at 75.870 kb on - strand, within GFF5212 at 76.091 kb on + strand at 76.092 kb on - strand at 76.392 kb on + strand, within GFF5213 at 76.393 kb on - strand, within GFF5213 at 76.393 kb on - strand, within GFF5213 at 76.500 kb on + strand, within GFF5213 at 76.572 kb on + strand, within GFF5213 at 76.573 kb on - strand, within GFF5213 at 76.573 kb on - strand, within GFF5213 at 76.722 kb on + strand at 76.827 kb on + strand, within GFF5214
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 73,722 + GFF5211 0.45 +0.9 73,809 + GFF5211 0.51 +1.1 73,810 - GFF5211 0.51 +0.9 73,894 - GFF5211 0.56 +0.8 73,951 - GFF5211 0.60 +1.5 73,992 + GFF5211 0.63 +0.3 74,020 - GFF5211 0.64 -2.5 74,160 + GFF5211 0.74 -1.0 74,161 - GFF5211 0.74 +0.2 74,161 - GFF5211 0.74 -0.1 74,161 - GFF5211 0.74 +0.4 74,241 + GFF5211 0.79 -1.0 74,762 + GFF5212 0.11 -1.3 74,762 + GFF5212 0.11 -1.3 74,762 + GFF5212 0.11 -0.1 74,763 - GFF5212 0.11 +1.2 74,847 - GFF5212 0.17 +0.9 74,891 + GFF5212 0.20 +0.9 74,891 + GFF5212 0.20 -2.7 75,242 + GFF5212 0.44 +1.0 75,242 + GFF5212 0.44 -0.6 75,329 + GFF5212 0.50 +1.0 75,330 - GFF5212 0.50 +1.9 75,330 - GFF5212 0.50 -0.6 75,335 + GFF5212 0.50 -2.6 75,410 + GFF5212 0.55 -3.5 75,662 + GFF5212 0.73 -1.7 75,663 - GFF5212 0.73 +0.7 75,675 - GFF5212 0.73 +0.3 75,803 + GFF5212 0.82 +0.8 75,803 + GFF5212 0.82 -1.0 75,803 + GFF5212 0.82 +0.9 75,803 + GFF5212 0.82 -0.8 75,804 - GFF5212 0.82 -1.0 75,869 + GFF5212 0.87 -1.6 75,870 - GFF5212 0.87 -2.3 75,870 - GFF5212 0.87 -0.7 75,870 - GFF5212 0.87 -2.2 76,091 + +1.7 76,092 - -1.6 76,392 + GFF5213 0.33 +1.9 76,393 - GFF5213 0.33 -1.1 76,393 - GFF5213 0.33 +0.0 76,500 + GFF5213 0.59 -0.3 76,572 + GFF5213 0.77 +0.6 76,573 - GFF5213 0.77 -1.8 76,573 - GFF5213 0.77 +1.0 76,722 + -2.5 76,827 + GFF5214 0.11 +0.6
Or see this region's nucleotide sequence