Strain Fitness in Variovorax sp. SCN45 around GFF5116

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5115 and GFF5116 overlap by 1 nucleotidesGFF5116 and GFF5117 are separated by 126 nucleotides GFF5115 - Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE, at 216,115 to 217,233 GFF5115 GFF5116 - Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD, at 217,233 to 218,735 GFF5116 GFF5117 - Transcriptional regulator, LysR family, at 218,862 to 219,746 GFF5117 Position (kb) 217 218 219Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 216.332 kb on + strand, within GFF5115at 216.332 kb on + strand, within GFF5115at 216.332 kb on + strand, within GFF5115at 216.332 kb on + strand, within GFF5115at 216.333 kb on - strand, within GFF5115at 216.575 kb on + strand, within GFF5115at 216.576 kb on - strand, within GFF5115at 216.576 kb on - strand, within GFF5115at 216.576 kb on - strand, within GFF5115at 216.576 kb on - strand, within GFF5115at 216.597 kb on - strand, within GFF5115at 216.597 kb on - strand, within GFF5115at 216.597 kb on - strand, within GFF5115at 216.597 kb on - strand, within GFF5115at 216.869 kb on + strand, within GFF5115at 216.869 kb on + strand, within GFF5115at 216.870 kb on - strand, within GFF5115at 216.870 kb on - strand, within GFF5115at 216.870 kb on - strand, within GFF5115at 217.064 kb on + strand, within GFF5115at 217.064 kb on + strand, within GFF5115at 217.065 kb on - strand, within GFF5115at 217.065 kb on - strand, within GFF5115at 217.124 kb on + strandat 217.125 kb on - strandat 217.198 kb on + strandat 217.199 kb on - strandat 217.199 kb on - strandat 217.199 kb on - strandat 217.604 kb on - strand, within GFF5116at 217.681 kb on + strand, within GFF5116at 217.681 kb on + strand, within GFF5116at 217.681 kb on + strand, within GFF5116at 217.681 kb on + strand, within GFF5116at 217.681 kb on + strand, within GFF5116at 217.681 kb on + strand, within GFF5116at 217.682 kb on - strand, within GFF5116at 217.682 kb on - strand, within GFF5116at 217.682 kb on - strand, within GFF5116at 217.682 kb on - strand, within GFF5116at 217.682 kb on - strand, within GFF5116at 217.682 kb on - strand, within GFF5116at 217.682 kb on - strand, within GFF5116at 217.682 kb on - strand, within GFF5116at 217.682 kb on - strand, within GFF5116at 217.682 kb on - strand, within GFF5116at 217.682 kb on - strand, within GFF5116at 217.682 kb on - strand, within GFF5116at 217.682 kb on - strand, within GFF5116at 217.682 kb on - strand, within GFF5116at 217.682 kb on - strand, within GFF5116at 217.682 kb on - strand, within GFF5116at 217.885 kb on - strand, within GFF5116at 217.886 kb on - strand, within GFF5116at 218.302 kb on + strand, within GFF5116at 218.303 kb on - strand, within GFF5116at 218.303 kb on - strand, within GFF5116at 218.305 kb on + strand, within GFF5116at 218.305 kb on + strand, within GFF5116at 218.305 kb on + strand, within GFF5116at 218.305 kb on + strand, within GFF5116at 218.305 kb on + strand, within GFF5116at 218.306 kb on - strand, within GFF5116at 218.306 kb on - strand, within GFF5116at 218.306 kb on - strand, within GFF5116at 218.306 kb on - strand, within GFF5116at 218.779 kb on + strandat 218.779 kb on + strandat 218.779 kb on + strandat 218.779 kb on + strandat 218.779 kb on + strandat 218.780 kb on - strandat 218.780 kb on - strandat 218.780 kb on - strandat 218.780 kb on - strandat 218.789 kb on + strandat 218.789 kb on + strandat 218.789 kb on + strandat 218.789 kb on + strandat 218.790 kb on - strandat 218.790 kb on - strandat 218.790 kb on - strandat 218.941 kb on + strandat 218.941 kb on + strandat 218.941 kb on + strandat 218.941 kb on + strandat 218.942 kb on - strandat 218.942 kb on - strandat 218.942 kb on - strandat 218.942 kb on - strandat 218.942 kb on - strandat 218.942 kb on - strandat 218.942 kb on - strandat 218.942 kb on - strandat 218.942 kb on - strandat 218.942 kb on - strandat 218.942 kb on - strandat 218.942 kb on - strandat 218.942 kb on - strandat 218.942 kb on - strandat 219.064 kb on + strand, within GFF5117at 219.064 kb on + strand, within GFF5117at 219.064 kb on + strand, within GFF5117at 219.064 kb on + strand, within GFF5117at 219.064 kb on + strand, within GFF5117at 219.065 kb on - strand, within GFF5117at 219.065 kb on - strand, within GFF5117at 219.065 kb on - strand, within GFF5117at 219.065 kb on - strand, within GFF5117at 219.065 kb on - strand, within GFF5117at 219.232 kb on + strand, within GFF5117at 219.232 kb on + strand, within GFF5117at 219.232 kb on + strand, within GFF5117at 219.232 kb on + strand, within GFF5117at 219.233 kb on - strand, within GFF5117at 219.233 kb on - strand, within GFF5117at 219.233 kb on - strand, within GFF5117at 219.233 kb on - strand, within GFF5117at 219.233 kb on - strand, within GFF5117at 219.233 kb on - strand, within GFF5117at 219.392 kb on - strand, within GFF5117at 219.392 kb on - strand, within GFF5117at 219.392 kb on - strand, within GFF5117at 219.392 kb on - strand, within GFF5117at 219.392 kb on - strand, within GFF5117at 219.392 kb on - strand, within GFF5117at 219.392 kb on - strand, within GFF5117at 219.544 kb on + strand, within GFF5117

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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216,332 + GFF5115 0.19 -0.7
216,332 + GFF5115 0.19 -2.0
216,332 + GFF5115 0.19 -3.2
216,332 + GFF5115 0.19 +0.2
216,333 - GFF5115 0.19 +0.0
216,575 + GFF5115 0.41 +3.1
216,576 - GFF5115 0.41 +1.4
216,576 - GFF5115 0.41 +0.1
216,576 - GFF5115 0.41 +1.3
216,576 - GFF5115 0.41 +1.6
216,597 - GFF5115 0.43 -0.5
216,597 - GFF5115 0.43 +0.4
216,597 - GFF5115 0.43 +1.5
216,597 - GFF5115 0.43 +1.5
216,869 + GFF5115 0.67 -1.8
216,869 + GFF5115 0.67 -1.6
216,870 - GFF5115 0.67 -0.6
216,870 - GFF5115 0.67 -1.3
216,870 - GFF5115 0.67 +1.8
217,064 + GFF5115 0.85 +0.5
217,064 + GFF5115 0.85 -2.3
217,065 - GFF5115 0.85 -1.5
217,065 - GFF5115 0.85 -3.0
217,124 + +1.4
217,125 - -0.7
217,198 + +0.6
217,199 - -2.8
217,199 - -1.0
217,199 - -3.2
217,604 - GFF5116 0.25 -0.8
217,681 + GFF5116 0.30 -0.6
217,681 + GFF5116 0.30 +0.8
217,681 + GFF5116 0.30 -2.8
217,681 + GFF5116 0.30 -0.7
217,681 + GFF5116 0.30 -1.3
217,681 + GFF5116 0.30 +0.9
217,682 - GFF5116 0.30 -0.8
217,682 - GFF5116 0.30 +2.2
217,682 - GFF5116 0.30 -1.5
217,682 - GFF5116 0.30 -0.4
217,682 - GFF5116 0.30 -1.1
217,682 - GFF5116 0.30 -2.2
217,682 - GFF5116 0.30 -2.5
217,682 - GFF5116 0.30 -1.2
217,682 - GFF5116 0.30 +0.4
217,682 - GFF5116 0.30 -0.5
217,682 - GFF5116 0.30 -1.1
217,682 - GFF5116 0.30 -1.3
217,682 - GFF5116 0.30 -0.2
217,682 - GFF5116 0.30 -1.4
217,682 - GFF5116 0.30 -2.0
217,682 - GFF5116 0.30 +2.2
217,885 - GFF5116 0.43 +1.5
217,886 - GFF5116 0.43 -0.4
218,302 + GFF5116 0.71 -2.5
218,303 - GFF5116 0.71 -0.3
218,303 - GFF5116 0.71 -1.0
218,305 + GFF5116 0.71 -0.3
218,305 + GFF5116 0.71 +0.4
218,305 + GFF5116 0.71 -2.5
218,305 + GFF5116 0.71 -1.3
218,305 + GFF5116 0.71 -2.3
218,306 - GFF5116 0.71 -1.9
218,306 - GFF5116 0.71 -1.6
218,306 - GFF5116 0.71 +0.6
218,306 - GFF5116 0.71 +0.5
218,779 + +1.0
218,779 + -0.0
218,779 + +0.3
218,779 + -0.4
218,779 + -1.5
218,780 - +0.3
218,780 - +1.6
218,780 - -2.5
218,780 - -1.8
218,789 + +1.1
218,789 + -2.0
218,789 + -0.8
218,789 + +1.1
218,790 - +0.4
218,790 - +1.4
218,790 - +0.2
218,941 + -1.8
218,941 + +0.4
218,941 + -0.4
218,941 + +2.3
218,942 - -1.5
218,942 - +0.9
218,942 - +0.6
218,942 - -1.4
218,942 - +1.1
218,942 - +0.1
218,942 - +1.5
218,942 - -3.1
218,942 - -0.4
218,942 - -0.1
218,942 - +1.0
218,942 - +0.5
218,942 - -2.0
218,942 - +0.2
219,064 + GFF5117 0.23 +3.6
219,064 + GFF5117 0.23 -1.4
219,064 + GFF5117 0.23 +1.9
219,064 + GFF5117 0.23 -1.1
219,064 + GFF5117 0.23 +1.0
219,065 - GFF5117 0.23 +1.2
219,065 - GFF5117 0.23 -2.0
219,065 - GFF5117 0.23 -2.5
219,065 - GFF5117 0.23 +0.0
219,065 - GFF5117 0.23 +2.1
219,232 + GFF5117 0.42 +1.5
219,232 + GFF5117 0.42 -2.4
219,232 + GFF5117 0.42 +1.8
219,232 + GFF5117 0.42 -0.4
219,233 - GFF5117 0.42 -1.4
219,233 - GFF5117 0.42 +0.2
219,233 - GFF5117 0.42 -0.1
219,233 - GFF5117 0.42 +0.6
219,233 - GFF5117 0.42 +0.5
219,233 - GFF5117 0.42 +0.6
219,392 - GFF5117 0.60 +0.1
219,392 - GFF5117 0.60 -1.4
219,392 - GFF5117 0.60 +0.6
219,392 - GFF5117 0.60 -2.3
219,392 - GFF5117 0.60 -0.1
219,392 - GFF5117 0.60 +3.7
219,392 - GFF5117 0.60 +1.5
219,544 + GFF5117 0.77 -2.7

Or see this region's nucleotide sequence