Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5071 and GFF5072 are separated by 95 nucleotides GFF5072 and GFF5073 overlap by 4 nucleotides GFF5073 and GFF5074 are separated by 162 nucleotides
GFF5071 - AmpG permease, at 173,165 to 174,532
GFF5071
GFF5072 - 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) FabV like, at 174,628 to 175,854
GFF5072
GFF5073 - 3-oxoacyl-[ACP] synthase, at 175,851 to 176,690
GFF5073
GFF5074 - Two-component transcriptional response regulator Dtpsy_0213, OmpR family, at 176,853 to 177,575
GFF5074
Position (kb) 174
175
176 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 173.661 kb on - strand, within GFF5071 at 173.768 kb on + strand, within GFF5071 at 173.769 kb on - strand, within GFF5071 at 173.796 kb on - strand, within GFF5071 at 173.796 kb on - strand, within GFF5071 at 173.796 kb on - strand, within GFF5071 at 173.796 kb on - strand, within GFF5071 at 173.796 kb on - strand, within GFF5071 at 173.945 kb on + strand, within GFF5071 at 173.945 kb on + strand, within GFF5071 at 173.945 kb on + strand, within GFF5071 at 173.987 kb on + strand, within GFF5071 at 173.987 kb on + strand, within GFF5071 at 173.987 kb on + strand, within GFF5071 at 173.987 kb on + strand, within GFF5071 at 173.987 kb on + strand, within GFF5071 at 173.988 kb on - strand, within GFF5071 at 173.988 kb on - strand, within GFF5071 at 173.988 kb on - strand, within GFF5071 at 173.988 kb on - strand, within GFF5071 at 174.032 kb on + strand, within GFF5071 at 174.032 kb on + strand, within GFF5071 at 174.032 kb on + strand, within GFF5071 at 174.032 kb on + strand, within GFF5071 at 174.033 kb on - strand, within GFF5071 at 174.083 kb on + strand, within GFF5071 at 174.083 kb on + strand, within GFF5071 at 174.083 kb on + strand, within GFF5071 at 174.083 kb on + strand, within GFF5071 at 174.083 kb on + strand, within GFF5071 at 174.084 kb on - strand, within GFF5071 at 174.084 kb on - strand, within GFF5071 at 174.200 kb on + strand, within GFF5071 at 174.200 kb on + strand, within GFF5071 at 174.200 kb on + strand, within GFF5071 at 174.200 kb on + strand, within GFF5071 at 174.200 kb on + strand, within GFF5071 at 174.200 kb on + strand, within GFF5071 at 174.200 kb on + strand, within GFF5071 at 174.200 kb on + strand, within GFF5071 at 174.201 kb on - strand, within GFF5071 at 174.201 kb on - strand, within GFF5071 at 174.201 kb on - strand, within GFF5071 at 174.302 kb on + strand, within GFF5071 at 174.303 kb on - strand, within GFF5071 at 174.303 kb on - strand, within GFF5071 at 174.329 kb on + strand, within GFF5071 at 174.329 kb on + strand, within GFF5071 at 174.329 kb on + strand, within GFF5071 at 174.330 kb on - strand, within GFF5071 at 174.330 kb on - strand, within GFF5071 at 174.330 kb on - strand, within GFF5071 at 174.330 kb on - strand, within GFF5071 at 174.330 kb on - strand, within GFF5071 at 174.330 kb on - strand, within GFF5071 at 174.330 kb on - strand, within GFF5071 at 174.330 kb on - strand, within GFF5071 at 174.344 kb on + strand, within GFF5071 at 174.345 kb on - strand, within GFF5071 at 174.345 kb on - strand, within GFF5071 at 174.420 kb on - strand at 174.425 kb on + strand at 174.426 kb on - strand at 174.426 kb on - strand at 174.531 kb on - strand at 174.546 kb on + strand at 174.546 kb on + strand at 174.546 kb on + strand at 174.546 kb on + strand at 174.546 kb on + strand at 174.546 kb on + strand at 174.546 kb on + strand at 174.546 kb on + strand at 174.547 kb on - strand at 174.547 kb on - strand at 174.547 kb on - strand at 174.547 kb on - strand at 174.547 kb on - strand at 174.583 kb on + strand at 174.583 kb on + strand at 174.599 kb on + strand at 174.599 kb on + strand at 174.599 kb on + strand at 174.599 kb on + strand at 174.600 kb on - strand at 174.600 kb on - strand at 174.600 kb on - strand at 174.600 kb on - strand at 174.674 kb on + strand at 174.674 kb on + strand at 174.675 kb on - strand at 174.675 kb on - strand at 174.940 kb on + strand, within GFF5072 at 174.940 kb on + strand, within GFF5072 at 174.941 kb on - strand, within GFF5072 at 174.941 kb on - strand, within GFF5072 at 174.941 kb on - strand, within GFF5072 at 174.941 kb on - strand, within GFF5072 at 175.009 kb on + strand, within GFF5072 at 175.009 kb on + strand, within GFF5072 at 175.010 kb on - strand, within GFF5072 at 175.010 kb on - strand, within GFF5072 at 175.405 kb on + strand, within GFF5072 at 175.522 kb on + strand, within GFF5072 at 175.522 kb on + strand, within GFF5072 at 175.522 kb on + strand, within GFF5072 at 175.522 kb on + strand, within GFF5072 at 175.523 kb on - strand, within GFF5072 at 175.523 kb on - strand, within GFF5072 at 175.523 kb on - strand, within GFF5072 at 175.523 kb on - strand, within GFF5072 at 175.523 kb on - strand, within GFF5072 at 175.523 kb on - strand, within GFF5072 at 175.523 kb on - strand, within GFF5072 at 175.523 kb on - strand, within GFF5072 at 175.523 kb on - strand, within GFF5072 at 175.787 kb on - strand at 175.787 kb on - strand at 175.890 kb on + strand at 175.890 kb on + strand at 175.890 kb on + strand at 175.890 kb on + strand at 175.890 kb on + strand at 175.890 kb on + strand at 175.891 kb on - strand at 175.891 kb on - strand at 175.891 kb on - strand at 175.891 kb on - strand at 176.157 kb on + strand, within GFF5073 at 176.157 kb on + strand, within GFF5073 at 176.157 kb on + strand, within GFF5073 at 176.157 kb on + strand, within GFF5073 at 176.157 kb on + strand, within GFF5073 at 176.157 kb on + strand, within GFF5073 at 176.157 kb on + strand, within GFF5073 at 176.157 kb on + strand, within GFF5073 at 176.157 kb on + strand, within GFF5073 at 176.158 kb on - strand, within GFF5073 at 176.158 kb on - strand, within GFF5073 at 176.158 kb on - strand, within GFF5073 at 176.158 kb on - strand, within GFF5073 at 176.158 kb on - strand, within GFF5073 at 176.158 kb on - strand, within GFF5073 at 176.158 kb on - strand, within GFF5073 at 176.158 kb on - strand, within GFF5073 at 176.158 kb on - strand, within GFF5073 at 176.158 kb on - strand, within GFF5073 at 176.158 kb on - strand, within GFF5073 at 176.158 kb on - strand, within GFF5073 at 176.158 kb on - strand, within GFF5073 at 176.241 kb on + strand, within GFF5073 at 176.241 kb on + strand, within GFF5073 at 176.241 kb on + strand, within GFF5073 at 176.373 kb on + strand, within GFF5073 at 176.373 kb on + strand, within GFF5073 at 176.374 kb on - strand, within GFF5073 at 176.761 kb on - strand at 176.804 kb on + strand at 176.805 kb on - strand at 176.815 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 173,661 - GFF5071 0.36 -0.7 173,768 + GFF5071 0.44 +1.5 173,769 - GFF5071 0.44 -0.6 173,796 - GFF5071 0.46 -2.6 173,796 - GFF5071 0.46 +0.6 173,796 - GFF5071 0.46 +1.2 173,796 - GFF5071 0.46 +1.3 173,796 - GFF5071 0.46 -0.7 173,945 + GFF5071 0.57 -0.6 173,945 + GFF5071 0.57 -3.6 173,945 + GFF5071 0.57 -3.9 173,987 + GFF5071 0.60 -3.2 173,987 + GFF5071 0.60 -1.4 173,987 + GFF5071 0.60 -1.1 173,987 + GFF5071 0.60 -1.8 173,987 + GFF5071 0.60 -3.7 173,988 - GFF5071 0.60 -0.7 173,988 - GFF5071 0.60 +1.9 173,988 - GFF5071 0.60 +2.2 173,988 - GFF5071 0.60 +0.6 174,032 + GFF5071 0.63 -1.3 174,032 + GFF5071 0.63 -3.5 174,032 + GFF5071 0.63 +0.3 174,032 + GFF5071 0.63 +0.3 174,033 - GFF5071 0.63 -2.1 174,083 + GFF5071 0.67 -2.6 174,083 + GFF5071 0.67 -0.8 174,083 + GFF5071 0.67 -4.0 174,083 + GFF5071 0.67 +0.6 174,083 + GFF5071 0.67 -4.2 174,084 - GFF5071 0.67 -1.3 174,084 - GFF5071 0.67 -2.7 174,200 + GFF5071 0.76 +2.2 174,200 + GFF5071 0.76 +1.2 174,200 + GFF5071 0.76 -2.0 174,200 + GFF5071 0.76 -2.6 174,200 + GFF5071 0.76 -1.0 174,200 + GFF5071 0.76 -3.6 174,200 + GFF5071 0.76 -1.6 174,200 + GFF5071 0.76 -0.6 174,201 - GFF5071 0.76 -2.1 174,201 - GFF5071 0.76 +3.4 174,201 - GFF5071 0.76 +2.5 174,302 + GFF5071 0.83 +0.7 174,303 - GFF5071 0.83 -0.9 174,303 - GFF5071 0.83 +0.2 174,329 + GFF5071 0.85 -0.4 174,329 + GFF5071 0.85 -0.5 174,329 + GFF5071 0.85 -0.3 174,330 - GFF5071 0.85 +1.3 174,330 - GFF5071 0.85 -3.4 174,330 - GFF5071 0.85 -1.5 174,330 - GFF5071 0.85 +3.6 174,330 - GFF5071 0.85 -2.0 174,330 - GFF5071 0.85 -0.8 174,330 - GFF5071 0.85 -1.3 174,330 - GFF5071 0.85 -2.8 174,344 + GFF5071 0.86 -2.0 174,345 - GFF5071 0.86 -2.2 174,345 - GFF5071 0.86 -2.0 174,420 - +1.2 174,425 + -2.7 174,426 - -0.4 174,426 - -0.1 174,531 - -1.8 174,546 + -0.4 174,546 + +3.7 174,546 + -0.7 174,546 + -0.8 174,546 + -2.6 174,546 + +1.1 174,546 + -1.1 174,546 + -0.8 174,547 - -2.8 174,547 - +1.1 174,547 - -1.6 174,547 - -1.5 174,547 - +0.6 174,583 + +1.1 174,583 + +0.8 174,599 + -0.7 174,599 + -2.7 174,599 + -0.8 174,599 + +1.0 174,600 - -0.8 174,600 - -2.3 174,600 - -0.4 174,600 - +1.7 174,674 + -1.1 174,674 + -0.4 174,675 - -4.5 174,675 - +0.8 174,940 + GFF5072 0.25 -0.6 174,940 + GFF5072 0.25 -1.3 174,941 - GFF5072 0.26 -3.4 174,941 - GFF5072 0.26 -2.5 174,941 - GFF5072 0.26 -0.8 174,941 - GFF5072 0.26 +1.9 175,009 + GFF5072 0.31 +1.2 175,009 + GFF5072 0.31 -1.8 175,010 - GFF5072 0.31 -1.3 175,010 - GFF5072 0.31 -0.5 175,405 + GFF5072 0.63 +0.6 175,522 + GFF5072 0.73 -0.3 175,522 + GFF5072 0.73 -2.1 175,522 + GFF5072 0.73 -0.1 175,522 + GFF5072 0.73 -2.8 175,523 - GFF5072 0.73 +0.5 175,523 - GFF5072 0.73 +0.0 175,523 - GFF5072 0.73 +0.0 175,523 - GFF5072 0.73 -0.3 175,523 - GFF5072 0.73 -1.0 175,523 - GFF5072 0.73 +0.8 175,523 - GFF5072 0.73 -3.5 175,523 - GFF5072 0.73 -0.4 175,523 - GFF5072 0.73 -0.2 175,787 - +0.4 175,787 - -0.4 175,890 + +0.5 175,890 + -2.8 175,890 + -1.3 175,890 + -2.7 175,890 + -0.3 175,890 + +0.7 175,891 - +1.2 175,891 - -2.7 175,891 - +0.1 175,891 - -1.1 176,157 + GFF5073 0.36 +0.9 176,157 + GFF5073 0.36 +1.6 176,157 + GFF5073 0.36 -0.3 176,157 + GFF5073 0.36 +0.5 176,157 + GFF5073 0.36 +1.9 176,157 + GFF5073 0.36 +1.9 176,157 + GFF5073 0.36 +2.2 176,157 + GFF5073 0.36 -1.4 176,157 + GFF5073 0.36 -2.5 176,158 - GFF5073 0.37 +1.8 176,158 - GFF5073 0.37 +2.7 176,158 - GFF5073 0.37 +1.2 176,158 - GFF5073 0.37 +0.0 176,158 - GFF5073 0.37 -1.0 176,158 - GFF5073 0.37 -0.5 176,158 - GFF5073 0.37 -0.4 176,158 - GFF5073 0.37 -2.1 176,158 - GFF5073 0.37 -1.4 176,158 - GFF5073 0.37 -0.6 176,158 - GFF5073 0.37 -2.6 176,158 - GFF5073 0.37 +0.8 176,158 - GFF5073 0.37 +0.1 176,241 + GFF5073 0.46 +1.7 176,241 + GFF5073 0.46 -2.6 176,241 + GFF5073 0.46 -0.8 176,373 + GFF5073 0.62 -2.0 176,373 + GFF5073 0.62 -0.6 176,374 - GFF5073 0.62 -1.7 176,761 - +1.5 176,804 + -3.3 176,805 - -0.4 176,815 - +0.6
Or see this region's nucleotide sequence