Strain Fitness in Variovorax sp. SCN45 around GFF491

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF490 and GFF491 are separated by 24 nucleotidesGFF491 and GFF492 are separated by 128 nucleotides GFF490 - Cell division trigger factor (EC 5.2.1.8), at 530,925 to 532,241 GFF490 GFF491 - no description, at 532,266 to 532,382 GFF491 GFF492 - no description, at 532,511 to 533,476 GFF492 Position (kb) 532 533Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 531.574 kb on + strand, within GFF490at 531.574 kb on + strand, within GFF490at 531.575 kb on - strand, within GFF490at 531.575 kb on - strand, within GFF490at 531.575 kb on - strand, within GFF490at 531.794 kb on + strand, within GFF490at 531.794 kb on + strand, within GFF490at 531.794 kb on + strand, within GFF490at 531.794 kb on + strand, within GFF490at 531.794 kb on + strand, within GFF490at 531.794 kb on + strand, within GFF490at 531.795 kb on - strand, within GFF490at 531.795 kb on - strand, within GFF490at 531.795 kb on - strand, within GFF490at 531.795 kb on - strand, within GFF490at 532.051 kb on + strand, within GFF490at 532.051 kb on + strand, within GFF490at 532.051 kb on + strand, within GFF490at 532.052 kb on - strand, within GFF490at 532.052 kb on - strand, within GFF490at 532.052 kb on - strand, within GFF490at 532.064 kb on - strand, within GFF490at 532.069 kb on + strand, within GFF490at 532.069 kb on + strand, within GFF490at 532.069 kb on + strand, within GFF490at 532.070 kb on - strand, within GFF490at 532.070 kb on - strand, within GFF490at 532.070 kb on - strand, within GFF490at 532.070 kb on - strand, within GFF490at 532.070 kb on - strand, within GFF490at 532.290 kb on + strand, within GFF491at 532.296 kb on + strand, within GFF491at 532.297 kb on - strand, within GFF491at 532.297 kb on - strand, within GFF491at 532.297 kb on - strand, within GFF491at 532.297 kb on - strand, within GFF491at 532.311 kb on + strand, within GFF491at 532.311 kb on + strand, within GFF491at 532.311 kb on + strand, within GFF491at 532.312 kb on - strand, within GFF491at 532.312 kb on - strand, within GFF491at 532.312 kb on - strand, within GFF491at 532.312 kb on - strand, within GFF491at 532.330 kb on + strand, within GFF491at 532.331 kb on - strand, within GFF491at 532.331 kb on - strand, within GFF491at 532.380 kb on + strandat 532.380 kb on + strandat 532.381 kb on - strandat 532.381 kb on - strandat 532.381 kb on - strandat 532.449 kb on - strandat 532.449 kb on - strandat 532.459 kb on + strandat 532.459 kb on + strandat 532.459 kb on + strandat 532.460 kb on - strandat 532.460 kb on - strandat 532.460 kb on - strandat 532.631 kb on + strand, within GFF492at 532.631 kb on + strand, within GFF492at 532.631 kb on + strand, within GFF492at 532.631 kb on + strand, within GFF492at 532.631 kb on + strand, within GFF492at 532.631 kb on + strand, within GFF492at 532.632 kb on - strand, within GFF492at 532.632 kb on - strand, within GFF492at 532.632 kb on - strand, within GFF492at 532.632 kb on - strand, within GFF492at 532.632 kb on - strand, within GFF492at 533.105 kb on + strand, within GFF492at 533.105 kb on + strand, within GFF492at 533.105 kb on + strand, within GFF492at 533.105 kb on + strand, within GFF492at 533.105 kb on + strand, within GFF492at 533.105 kb on + strand, within GFF492at 533.105 kb on + strand, within GFF492at 533.106 kb on - strand, within GFF492at 533.106 kb on - strand, within GFF492at 533.106 kb on - strand, within GFF492at 533.106 kb on - strand, within GFF492at 533.106 kb on - strand, within GFF492at 533.106 kb on - strand, within GFF492at 533.106 kb on - strand, within GFF492at 533.106 kb on - strand, within GFF492at 533.106 kb on - strand, within GFF492at 533.106 kb on - strand, within GFF492at 533.106 kb on - strand, within GFF492

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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531,574 + GFF490 0.49 +0.5
531,574 + GFF490 0.49 +0.8
531,575 - GFF490 0.49 -0.5
531,575 - GFF490 0.49 -0.8
531,575 - GFF490 0.49 -2.6
531,794 + GFF490 0.66 -0.5
531,794 + GFF490 0.66 -3.1
531,794 + GFF490 0.66 -0.5
531,794 + GFF490 0.66 -1.5
531,794 + GFF490 0.66 -0.0
531,794 + GFF490 0.66 +1.5
531,795 - GFF490 0.66 -3.3
531,795 - GFF490 0.66 -1.6
531,795 - GFF490 0.66 +0.2
531,795 - GFF490 0.66 -0.5
532,051 + GFF490 0.85 -1.8
532,051 + GFF490 0.85 +1.7
532,051 + GFF490 0.85 -1.2
532,052 - GFF490 0.86 -3.6
532,052 - GFF490 0.86 -2.3
532,052 - GFF490 0.86 -3.3
532,064 - GFF490 0.86 -3.4
532,069 + GFF490 0.87 -1.0
532,069 + GFF490 0.87 -1.5
532,069 + GFF490 0.87 -2.7
532,070 - GFF490 0.87 +1.5
532,070 - GFF490 0.87 -1.8
532,070 - GFF490 0.87 -2.6
532,070 - GFF490 0.87 -1.9
532,070 - GFF490 0.87 +0.8
532,290 + GFF491 0.21 -2.2
532,296 + GFF491 0.26 -1.8
532,297 - GFF491 0.26 +2.0
532,297 - GFF491 0.26 +3.1
532,297 - GFF491 0.26 +4.9
532,297 - GFF491 0.26 +0.7
532,311 + GFF491 0.38 -1.3
532,311 + GFF491 0.38 -1.6
532,311 + GFF491 0.38 -3.5
532,312 - GFF491 0.39 -0.6
532,312 - GFF491 0.39 -0.8
532,312 - GFF491 0.39 +2.1
532,312 - GFF491 0.39 -0.5
532,330 + GFF491 0.55 +0.5
532,331 - GFF491 0.56 -1.0
532,331 - GFF491 0.56 -2.1
532,380 + +0.3
532,380 + -1.8
532,381 - -2.5
532,381 - +0.3
532,381 - -3.4
532,449 - -1.0
532,449 - -2.8
532,459 + -1.3
532,459 + +1.6
532,459 + +0.6
532,460 - -0.6
532,460 - +1.5
532,460 - +0.3
532,631 + GFF492 0.12 +1.3
532,631 + GFF492 0.12 -0.8
532,631 + GFF492 0.12 +0.7
532,631 + GFF492 0.12 +1.5
532,631 + GFF492 0.12 +0.7
532,631 + GFF492 0.12 +2.9
532,632 - GFF492 0.13 +0.1
532,632 - GFF492 0.13 +1.1
532,632 - GFF492 0.13 +0.4
532,632 - GFF492 0.13 -3.0
532,632 - GFF492 0.13 -1.2
533,105 + GFF492 0.61 -1.3
533,105 + GFF492 0.61 +1.5
533,105 + GFF492 0.61 +0.6
533,105 + GFF492 0.61 +0.5
533,105 + GFF492 0.61 -1.2
533,105 + GFF492 0.61 -3.8
533,105 + GFF492 0.61 -1.5
533,106 - GFF492 0.62 +2.5
533,106 - GFF492 0.62 +1.8
533,106 - GFF492 0.62 +2.3
533,106 - GFF492 0.62 -1.3
533,106 - GFF492 0.62 -0.8
533,106 - GFF492 0.62 +0.3
533,106 - GFF492 0.62 -2.2
533,106 - GFF492 0.62 +1.2
533,106 - GFF492 0.62 +1.8
533,106 - GFF492 0.62 -0.8
533,106 - GFF492 0.62 -0.9

Or see this region's nucleotide sequence