Strain Fitness in Variovorax sp. SCN45 around GFF481

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF480 and GFF481 are separated by 21 nucleotidesGFF481 and GFF482 are separated by 17 nucleotides GFF480 - Glycine betaine/L-proline transport ATP-binding protein ProV (TC 3.A.1.12.1), at 518,495 to 519,751 GFF480 GFF481 - Glycine betaine/L-proline transport system permease protein ProW (TC 3.A.1.12.1), at 519,773 to 520,948 GFF481 GFF482 - Glycine betaine/L-proline transport substrate-binding protein ProX (TC 3.A.1.12.1), at 520,966 to 521,985 GFF482 Position (kb) 519 520 521Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 518.975 kb on + strand, within GFF480at 518.975 kb on + strand, within GFF480at 518.975 kb on + strand, within GFF480at 518.975 kb on + strand, within GFF480at 519.152 kb on - strand, within GFF480at 519.272 kb on + strand, within GFF480at 519.272 kb on + strand, within GFF480at 519.272 kb on + strand, within GFF480at 519.272 kb on + strand, within GFF480at 519.272 kb on + strand, within GFF480at 519.272 kb on + strand, within GFF480at 519.272 kb on + strand, within GFF480at 519.272 kb on + strand, within GFF480at 519.272 kb on + strand, within GFF480at 519.272 kb on + strand, within GFF480at 519.272 kb on + strand, within GFF480at 519.273 kb on - strand, within GFF480at 519.273 kb on - strand, within GFF480at 519.273 kb on - strand, within GFF480at 519.273 kb on - strand, within GFF480at 519.273 kb on - strand, within GFF480at 519.273 kb on - strand, within GFF480at 519.273 kb on - strand, within GFF480at 519.273 kb on - strand, within GFF480at 519.273 kb on - strand, within GFF480at 519.273 kb on - strand, within GFF480at 519.273 kb on - strand, within GFF480at 519.425 kb on + strand, within GFF480at 519.426 kb on - strand, within GFF480at 519.426 kb on - strand, within GFF480at 519.449 kb on + strand, within GFF480at 519.449 kb on + strand, within GFF480at 519.812 kb on - strandat 520.409 kb on + strand, within GFF481at 520.409 kb on + strand, within GFF481at 520.409 kb on + strand, within GFF481at 520.409 kb on + strand, within GFF481at 520.409 kb on + strand, within GFF481at 520.410 kb on - strand, within GFF481at 520.410 kb on - strand, within GFF481at 520.410 kb on - strand, within GFF481at 520.410 kb on - strand, within GFF481at 520.410 kb on - strand, within GFF481at 520.410 kb on - strand, within GFF481at 520.449 kb on + strand, within GFF481at 520.449 kb on + strand, within GFF481at 520.449 kb on + strand, within GFF481at 520.449 kb on + strand, within GFF481at 520.450 kb on - strand, within GFF481at 520.450 kb on - strand, within GFF481at 520.450 kb on - strand, within GFF481at 520.450 kb on - strand, within GFF481at 520.557 kb on - strand, within GFF481at 520.557 kb on - strand, within GFF481at 521.155 kb on + strand, within GFF482at 521.155 kb on + strand, within GFF482at 521.156 kb on - strand, within GFF482at 521.156 kb on - strand, within GFF482at 521.156 kb on - strand, within GFF482at 521.156 kb on - strand, within GFF482at 521.156 kb on - strand, within GFF482at 521.266 kb on + strand, within GFF482at 521.266 kb on + strand, within GFF482at 521.267 kb on - strand, within GFF482at 521.267 kb on - strand, within GFF482at 521.267 kb on - strand, within GFF482at 521.311 kb on + strand, within GFF482at 521.311 kb on + strand, within GFF482at 521.311 kb on + strand, within GFF482at 521.311 kb on + strand, within GFF482at 521.312 kb on - strand, within GFF482at 521.312 kb on - strand, within GFF482at 521.312 kb on - strand, within GFF482at 521.312 kb on - strand, within GFF482at 521.335 kb on + strand, within GFF482at 521.335 kb on + strand, within GFF482at 521.336 kb on - strand, within GFF482at 521.336 kb on - strand, within GFF482at 521.366 kb on - strand, within GFF482at 521.366 kb on - strand, within GFF482at 521.506 kb on + strand, within GFF482at 521.507 kb on - strand, within GFF482at 521.545 kb on + strand, within GFF482at 521.545 kb on + strand, within GFF482at 521.545 kb on + strand, within GFF482at 521.545 kb on + strand, within GFF482at 521.546 kb on - strand, within GFF482at 521.546 kb on - strand, within GFF482at 521.546 kb on - strand, within GFF482at 521.602 kb on + strand, within GFF482at 521.602 kb on + strand, within GFF482at 521.602 kb on + strand, within GFF482at 521.602 kb on + strand, within GFF482at 521.602 kb on + strand, within GFF482at 521.602 kb on + strand, within GFF482at 521.602 kb on + strand, within GFF482at 521.602 kb on + strand, within GFF482at 521.602 kb on + strand, within GFF482at 521.603 kb on - strand, within GFF482at 521.603 kb on - strand, within GFF482at 521.603 kb on - strand, within GFF482at 521.603 kb on - strand, within GFF482at 521.603 kb on - strand, within GFF482at 521.603 kb on - strand, within GFF482at 521.603 kb on - strand, within GFF482at 521.603 kb on - strand, within GFF482at 521.603 kb on - strand, within GFF482at 521.605 kb on + strand, within GFF482at 521.605 kb on + strand, within GFF482at 521.605 kb on + strand, within GFF482at 521.605 kb on + strand, within GFF482at 521.605 kb on + strand, within GFF482at 521.605 kb on + strand, within GFF482at 521.605 kb on + strand, within GFF482at 521.605 kb on + strand, within GFF482at 521.606 kb on - strand, within GFF482at 521.606 kb on - strand, within GFF482at 521.606 kb on - strand, within GFF482at 521.606 kb on - strand, within GFF482at 521.606 kb on - strand, within GFF482at 521.606 kb on - strand, within GFF482at 521.620 kb on + strand, within GFF482at 521.621 kb on - strand, within GFF482at 521.621 kb on - strand, within GFF482at 521.737 kb on + strand, within GFF482at 521.737 kb on + strand, within GFF482at 521.737 kb on + strand, within GFF482at 521.738 kb on - strand, within GFF482at 521.738 kb on - strand, within GFF482at 521.738 kb on - strand, within GFF482

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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518,975 + GFF480 0.38 -0.8
518,975 + GFF480 0.38 -1.3
518,975 + GFF480 0.38 +0.1
518,975 + GFF480 0.38 -1.5
519,152 - GFF480 0.52 -0.2
519,272 + GFF480 0.62 -1.3
519,272 + GFF480 0.62 +1.1
519,272 + GFF480 0.62 -1.3
519,272 + GFF480 0.62 -1.3
519,272 + GFF480 0.62 -0.0
519,272 + GFF480 0.62 -0.1
519,272 + GFF480 0.62 -3.1
519,272 + GFF480 0.62 -0.5
519,272 + GFF480 0.62 +0.5
519,272 + GFF480 0.62 -0.4
519,272 + GFF480 0.62 -2.7
519,273 - GFF480 0.62 -0.8
519,273 - GFF480 0.62 +0.4
519,273 - GFF480 0.62 -0.0
519,273 - GFF480 0.62 +0.2
519,273 - GFF480 0.62 +1.7
519,273 - GFF480 0.62 -0.1
519,273 - GFF480 0.62 +0.9
519,273 - GFF480 0.62 -2.2
519,273 - GFF480 0.62 +0.5
519,273 - GFF480 0.62 -0.3
519,273 - GFF480 0.62 -2.0
519,425 + GFF480 0.74 +1.2
519,426 - GFF480 0.74 -1.6
519,426 - GFF480 0.74 -2.2
519,449 + GFF480 0.76 -2.2
519,449 + GFF480 0.76 +0.2
519,812 - -0.4
520,409 + GFF481 0.54 -2.2
520,409 + GFF481 0.54 -0.8
520,409 + GFF481 0.54 -1.3
520,409 + GFF481 0.54 -2.3
520,409 + GFF481 0.54 +2.1
520,410 - GFF481 0.54 -1.0
520,410 - GFF481 0.54 -0.0
520,410 - GFF481 0.54 -2.4
520,410 - GFF481 0.54 +0.1
520,410 - GFF481 0.54 +1.2
520,410 - GFF481 0.54 +0.9
520,449 + GFF481 0.57 -2.8
520,449 + GFF481 0.57 +0.2
520,449 + GFF481 0.57 -1.4
520,449 + GFF481 0.57 +1.5
520,450 - GFF481 0.58 +0.5
520,450 - GFF481 0.58 -1.3
520,450 - GFF481 0.58 +0.4
520,450 - GFF481 0.58 -1.6
520,557 - GFF481 0.67 -0.8
520,557 - GFF481 0.67 +1.1
521,155 + GFF482 0.19 -0.3
521,155 + GFF482 0.19 +0.5
521,156 - GFF482 0.19 -2.4
521,156 - GFF482 0.19 -0.8
521,156 - GFF482 0.19 -2.4
521,156 - GFF482 0.19 +0.4
521,156 - GFF482 0.19 -2.5
521,266 + GFF482 0.29 +1.5
521,266 + GFF482 0.29 +3.2
521,267 - GFF482 0.30 +1.0
521,267 - GFF482 0.30 +0.2
521,267 - GFF482 0.30 -1.6
521,311 + GFF482 0.34 -3.7
521,311 + GFF482 0.34 -0.8
521,311 + GFF482 0.34 -2.0
521,311 + GFF482 0.34 -0.5
521,312 - GFF482 0.34 -2.6
521,312 - GFF482 0.34 +0.6
521,312 - GFF482 0.34 -1.8
521,312 - GFF482 0.34 -0.5
521,335 + GFF482 0.36 -0.4
521,335 + GFF482 0.36 -2.4
521,336 - GFF482 0.36 -0.4
521,336 - GFF482 0.36 +0.1
521,366 - GFF482 0.39 +0.1
521,366 - GFF482 0.39 -0.2
521,506 + GFF482 0.53 -0.5
521,507 - GFF482 0.53 -4.1
521,545 + GFF482 0.57 +0.3
521,545 + GFF482 0.57 -0.5
521,545 + GFF482 0.57 -2.0
521,545 + GFF482 0.57 +1.8
521,546 - GFF482 0.57 +0.5
521,546 - GFF482 0.57 -1.9
521,546 - GFF482 0.57 -3.2
521,602 + GFF482 0.62 +2.5
521,602 + GFF482 0.62 -0.5
521,602 + GFF482 0.62 -3.2
521,602 + GFF482 0.62 -2.9
521,602 + GFF482 0.62 +3.0
521,602 + GFF482 0.62 +1.5
521,602 + GFF482 0.62 -0.8
521,602 + GFF482 0.62 -2.0
521,602 + GFF482 0.62 -2.4
521,603 - GFF482 0.62 +0.8
521,603 - GFF482 0.62 -2.6
521,603 - GFF482 0.62 +2.0
521,603 - GFF482 0.62 +1.0
521,603 - GFF482 0.62 -1.6
521,603 - GFF482 0.62 +0.2
521,603 - GFF482 0.62 +1.4
521,603 - GFF482 0.62 -2.0
521,603 - GFF482 0.62 -1.6
521,605 + GFF482 0.63 +0.4
521,605 + GFF482 0.63 -0.3
521,605 + GFF482 0.63 -0.8
521,605 + GFF482 0.63 +1.5
521,605 + GFF482 0.63 -1.0
521,605 + GFF482 0.63 -3.1
521,605 + GFF482 0.63 -0.6
521,605 + GFF482 0.63 -1.9
521,606 - GFF482 0.63 -0.5
521,606 - GFF482 0.63 -1.2
521,606 - GFF482 0.63 -1.5
521,606 - GFF482 0.63 -1.5
521,606 - GFF482 0.63 +1.0
521,606 - GFF482 0.63 -3.7
521,620 + GFF482 0.64 +1.0
521,621 - GFF482 0.64 -1.0
521,621 - GFF482 0.64 -2.5
521,737 + GFF482 0.76 -0.5
521,737 + GFF482 0.76 -0.9
521,737 + GFF482 0.76 -1.3
521,738 - GFF482 0.76 -0.9
521,738 - GFF482 0.76 +3.1
521,738 - GFF482 0.76 +3.1

Or see this region's nucleotide sequence