Strain Fitness in Variovorax sp. SCN45 around GFF4769

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4767 and GFF4768 are separated by 187 nucleotidesGFF4768 and GFF4769 overlap by 8 nucleotidesGFF4769 and GFF4770 are separated by 37 nucleotides GFF4767 - Efflux ABC transporter, permease/ATP-binding protein, at 133,327 to 135,087 GFF4767 GFF4768 - Transcriptional regulator, MarR family, at 135,275 to 135,724 GFF4768 GFF4769 - Outer membrane factor (OMF) lipoprotein associated wth EmrAB-OMF efflux system, at 135,717 to 137,189 GFF4769 GFF4770 - Multidrug efflux system EmrAB-OMF, membrane fusion component EmrA, at 137,227 to 138,549 GFF4770 Position (kb) 135 136 137 138Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 134.827 kb on - strand, within GFF4767at 134.827 kb on - strand, within GFF4767at 134.828 kb on + strand, within GFF4767at 134.828 kb on + strand, within GFF4767at 134.829 kb on - strand, within GFF4767at 134.829 kb on - strand, within GFF4767at 134.829 kb on - strand, within GFF4767at 134.829 kb on - strand, within GFF4767at 134.829 kb on - strand, within GFF4767at 134.829 kb on - strand, within GFF4767at 135.102 kb on + strandat 135.102 kb on + strandat 135.102 kb on + strandat 135.103 kb on - strandat 135.103 kb on - strandat 135.103 kb on - strandat 135.103 kb on - strandat 135.103 kb on - strandat 135.123 kb on - strandat 135.257 kb on + strandat 135.258 kb on - strandat 135.272 kb on + strandat 135.272 kb on + strandat 135.272 kb on + strandat 135.272 kb on + strandat 135.272 kb on + strandat 135.272 kb on + strandat 135.272 kb on + strandat 135.272 kb on + strandat 135.272 kb on + strandat 135.272 kb on + strandat 135.272 kb on + strandat 135.272 kb on + strandat 135.272 kb on + strandat 135.272 kb on + strandat 135.272 kb on + strandat 135.273 kb on - strandat 135.273 kb on - strandat 135.273 kb on - strandat 135.273 kb on - strandat 135.273 kb on - strandat 135.273 kb on - strandat 135.273 kb on - strandat 135.273 kb on - strandat 135.273 kb on - strandat 135.273 kb on - strandat 135.273 kb on - strandat 135.296 kb on + strandat 135.296 kb on + strandat 135.297 kb on - strandat 135.324 kb on + strand, within GFF4768at 135.336 kb on + strand, within GFF4768at 135.336 kb on + strand, within GFF4768at 135.336 kb on + strand, within GFF4768at 135.371 kb on + strand, within GFF4768at 135.372 kb on - strand, within GFF4768at 135.392 kb on + strand, within GFF4768at 135.392 kb on + strand, within GFF4768at 135.590 kb on + strand, within GFF4768at 135.590 kb on + strand, within GFF4768at 135.590 kb on + strand, within GFF4768at 135.590 kb on + strand, within GFF4768at 135.590 kb on + strand, within GFF4768at 135.590 kb on + strand, within GFF4768at 135.590 kb on + strand, within GFF4768at 135.591 kb on - strand, within GFF4768at 135.591 kb on - strand, within GFF4768at 135.591 kb on - strand, within GFF4768at 135.591 kb on - strand, within GFF4768at 135.591 kb on - strand, within GFF4768at 135.591 kb on - strand, within GFF4768at 135.591 kb on - strand, within GFF4768at 135.662 kb on + strand, within GFF4768at 135.662 kb on + strand, within GFF4768at 135.662 kb on + strand, within GFF4768at 135.662 kb on + strand, within GFF4768at 135.662 kb on + strand, within GFF4768at 135.662 kb on + strand, within GFF4768at 135.662 kb on + strand, within GFF4768at 135.663 kb on - strand, within GFF4768at 135.663 kb on - strand, within GFF4768at 135.663 kb on - strand, within GFF4768at 135.663 kb on - strand, within GFF4768at 135.712 kb on + strandat 136.095 kb on + strand, within GFF4769at 136.095 kb on + strand, within GFF4769at 136.095 kb on + strand, within GFF4769at 136.095 kb on + strand, within GFF4769at 136.095 kb on + strand, within GFF4769at 136.095 kb on + strand, within GFF4769at 136.095 kb on + strand, within GFF4769at 136.095 kb on + strand, within GFF4769at 136.095 kb on + strand, within GFF4769at 136.095 kb on + strand, within GFF4769at 136.095 kb on + strand, within GFF4769at 136.095 kb on + strand, within GFF4769at 136.095 kb on + strand, within GFF4769at 136.095 kb on + strand, within GFF4769at 136.095 kb on + strand, within GFF4769at 136.095 kb on + strand, within GFF4769at 136.095 kb on + strand, within GFF4769at 136.095 kb on + strand, within GFF4769at 136.095 kb on + strand, within GFF4769at 136.095 kb on + strand, within GFF4769at 136.095 kb on + strand, within GFF4769at 136.095 kb on + strand, within GFF4769at 136.095 kb on + strand, within GFF4769at 136.095 kb on + strand, within GFF4769at 136.095 kb on + strand, within GFF4769at 136.095 kb on + strand, within GFF4769at 136.096 kb on - strand, within GFF4769at 136.096 kb on - strand, within GFF4769at 136.096 kb on - strand, within GFF4769at 136.096 kb on - strand, within GFF4769at 136.096 kb on - strand, within GFF4769at 136.096 kb on - strand, within GFF4769at 136.096 kb on - strand, within GFF4769at 136.096 kb on - strand, within GFF4769at 136.096 kb on - strand, within GFF4769at 136.096 kb on - strand, within GFF4769at 136.096 kb on - strand, within GFF4769at 136.096 kb on - strand, within GFF4769at 136.096 kb on - strand, within GFF4769at 136.096 kb on - strand, within GFF4769at 136.096 kb on - strand, within GFF4769at 136.096 kb on - strand, within GFF4769at 136.096 kb on - strand, within GFF4769at 136.096 kb on - strand, within GFF4769at 136.101 kb on + strand, within GFF4769at 136.102 kb on - strand, within GFF4769at 136.102 kb on - strand, within GFF4769at 136.284 kb on + strand, within GFF4769at 136.284 kb on + strand, within GFF4769at 136.284 kb on + strand, within GFF4769at 136.284 kb on + strand, within GFF4769at 136.285 kb on - strand, within GFF4769at 136.285 kb on - strand, within GFF4769at 136.285 kb on - strand, within GFF4769at 136.680 kb on + strand, within GFF4769at 136.680 kb on + strand, within GFF4769at 136.680 kb on + strand, within GFF4769at 136.863 kb on + strand, within GFF4769at 136.980 kb on + strand, within GFF4769at 136.980 kb on + strand, within GFF4769at 137.022 kb on + strand, within GFF4769at 137.022 kb on + strand, within GFF4769at 137.022 kb on + strand, within GFF4769at 137.022 kb on + strand, within GFF4769at 137.022 kb on + strand, within GFF4769at 137.023 kb on - strand, within GFF4769at 137.023 kb on - strand, within GFF4769at 137.023 kb on - strand, within GFF4769at 137.023 kb on - strand, within GFF4769at 137.023 kb on - strand, within GFF4769at 137.023 kb on - strand, within GFF4769at 137.235 kb on + strandat 137.235 kb on + strandat 137.368 kb on + strand, within GFF4770at 137.368 kb on + strand, within GFF4770at 137.368 kb on + strand, within GFF4770at 137.392 kb on + strand, within GFF4770at 137.392 kb on + strand, within GFF4770at 137.392 kb on + strand, within GFF4770at 137.393 kb on - strand, within GFF4770at 137.393 kb on - strand, within GFF4770at 137.413 kb on + strand, within GFF4770at 137.413 kb on + strand, within GFF4770at 137.413 kb on + strand, within GFF4770at 137.413 kb on + strand, within GFF4770at 137.414 kb on - strand, within GFF4770at 137.602 kb on + strand, within GFF4770at 137.603 kb on - strand, within GFF4770at 137.603 kb on - strand, within GFF4770at 137.603 kb on - strand, within GFF4770at 137.917 kb on + strand, within GFF4770at 137.917 kb on + strand, within GFF4770at 137.917 kb on + strand, within GFF4770at 137.918 kb on - strand, within GFF4770at 137.918 kb on - strand, within GFF4770at 137.962 kb on + strand, within GFF4770at 137.962 kb on + strand, within GFF4770at 137.963 kb on - strand, within GFF4770at 137.963 kb on - strand, within GFF4770at 138.124 kb on + strand, within GFF4770at 138.124 kb on + strand, within GFF4770at 138.125 kb on - strand, within GFF4770at 138.125 kb on - strand, within GFF4770at 138.142 kb on + strand, within GFF4770at 138.143 kb on - strand, within GFF4770at 138.143 kb on - strand, within GFF4770at 138.143 kb on - strand, within GFF4770

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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134,827 - GFF4767 0.85 +1.2
134,827 - GFF4767 0.85 +1.5
134,828 + GFF4767 0.85 -0.7
134,828 + GFF4767 0.85 -3.1
134,829 - GFF4767 0.85 +0.3
134,829 - GFF4767 0.85 +0.3
134,829 - GFF4767 0.85 +0.3
134,829 - GFF4767 0.85 -1.2
134,829 - GFF4767 0.85 -0.4
134,829 - GFF4767 0.85 -2.4
135,102 + -2.1
135,102 + +1.6
135,102 + -0.5
135,103 - -1.2
135,103 - -0.0
135,103 - +1.4
135,103 - +0.6
135,103 - -0.6
135,123 - +0.7
135,257 + +0.5
135,258 - -2.4
135,272 + -3.6
135,272 + -2.2
135,272 + +0.3
135,272 + -2.4
135,272 + -1.4
135,272 + -0.7
135,272 + +0.6
135,272 + -2.2
135,272 + +0.9
135,272 + +0.8
135,272 + +0.1
135,272 + -2.9
135,272 + +0.6
135,272 + -3.1
135,272 + -0.6
135,273 - -0.4
135,273 - +0.8
135,273 - -1.5
135,273 - +0.2
135,273 - -2.1
135,273 - +1.9
135,273 - -0.5
135,273 - -1.2
135,273 - -0.4
135,273 - +0.7
135,273 - +0.6
135,296 + -0.5
135,296 + -2.5
135,297 - +2.1
135,324 + GFF4768 0.11 -2.2
135,336 + GFF4768 0.14 -2.6
135,336 + GFF4768 0.14 -0.9
135,336 + GFF4768 0.14 -1.7
135,371 + GFF4768 0.21 -1.2
135,372 - GFF4768 0.22 +1.1
135,392 + GFF4768 0.26 -2.7
135,392 + GFF4768 0.26 -0.1
135,590 + GFF4768 0.70 -0.2
135,590 + GFF4768 0.70 -2.9
135,590 + GFF4768 0.70 -2.2
135,590 + GFF4768 0.70 -0.3
135,590 + GFF4768 0.70 -1.2
135,590 + GFF4768 0.70 -3.4
135,590 + GFF4768 0.70 -4.7
135,591 - GFF4768 0.70 -1.7
135,591 - GFF4768 0.70 -2.4
135,591 - GFF4768 0.70 -1.4
135,591 - GFF4768 0.70 +0.6
135,591 - GFF4768 0.70 +0.6
135,591 - GFF4768 0.70 +1.2
135,591 - GFF4768 0.70 -0.7
135,662 + GFF4768 0.86 -4.4
135,662 + GFF4768 0.86 -1.1
135,662 + GFF4768 0.86 -1.2
135,662 + GFF4768 0.86 +0.1
135,662 + GFF4768 0.86 -0.7
135,662 + GFF4768 0.86 -3.5
135,662 + GFF4768 0.86 -1.4
135,663 - GFF4768 0.86 -1.5
135,663 - GFF4768 0.86 -2.6
135,663 - GFF4768 0.86 -2.5
135,663 - GFF4768 0.86 -1.7
135,712 + -1.0
136,095 + GFF4769 0.26 -0.5
136,095 + GFF4769 0.26 -1.1
136,095 + GFF4769 0.26 -1.7
136,095 + GFF4769 0.26 +0.3
136,095 + GFF4769 0.26 -2.8
136,095 + GFF4769 0.26 -1.8
136,095 + GFF4769 0.26 -0.1
136,095 + GFF4769 0.26 -0.1
136,095 + GFF4769 0.26 -2.4
136,095 + GFF4769 0.26 -1.8
136,095 + GFF4769 0.26 +0.4
136,095 + GFF4769 0.26 -1.4
136,095 + GFF4769 0.26 -2.7
136,095 + GFF4769 0.26 -1.7
136,095 + GFF4769 0.26 +1.1
136,095 + GFF4769 0.26 +0.2
136,095 + GFF4769 0.26 -1.9
136,095 + GFF4769 0.26 -0.5
136,095 + GFF4769 0.26 +0.3
136,095 + GFF4769 0.26 +0.5
136,095 + GFF4769 0.26 +1.5
136,095 + GFF4769 0.26 -1.4
136,095 + GFF4769 0.26 -0.8
136,095 + GFF4769 0.26 +2.0
136,095 + GFF4769 0.26 +1.0
136,095 + GFF4769 0.26 -1.4
136,096 - GFF4769 0.26 -1.4
136,096 - GFF4769 0.26 -1.1
136,096 - GFF4769 0.26 +0.4
136,096 - GFF4769 0.26 -1.5
136,096 - GFF4769 0.26 +1.9
136,096 - GFF4769 0.26 -0.7
136,096 - GFF4769 0.26 +0.2
136,096 - GFF4769 0.26 -2.4
136,096 - GFF4769 0.26 +1.6
136,096 - GFF4769 0.26 -0.1
136,096 - GFF4769 0.26 +0.2
136,096 - GFF4769 0.26 +0.7
136,096 - GFF4769 0.26 -0.5
136,096 - GFF4769 0.26 +1.6
136,096 - GFF4769 0.26 -0.0
136,096 - GFF4769 0.26 -1.7
136,096 - GFF4769 0.26 -4.1
136,096 - GFF4769 0.26 -3.0
136,101 + GFF4769 0.26 +0.6
136,102 - GFF4769 0.26 -0.0
136,102 - GFF4769 0.26 -2.1
136,284 + GFF4769 0.38 -4.1
136,284 + GFF4769 0.38 -0.7
136,284 + GFF4769 0.38 +2.5
136,284 + GFF4769 0.38 +0.6
136,285 - GFF4769 0.39 +0.6
136,285 - GFF4769 0.39 +0.3
136,285 - GFF4769 0.39 -1.2
136,680 + GFF4769 0.65 -1.7
136,680 + GFF4769 0.65 +0.3
136,680 + GFF4769 0.65 +0.4
136,863 + GFF4769 0.78 -3.0
136,980 + GFF4769 0.86 +0.6
136,980 + GFF4769 0.86 +0.2
137,022 + GFF4769 0.89 -0.4
137,022 + GFF4769 0.89 +1.6
137,022 + GFF4769 0.89 -1.6
137,022 + GFF4769 0.89 -0.4
137,022 + GFF4769 0.89 +0.1
137,023 - GFF4769 0.89 -0.5
137,023 - GFF4769 0.89 -1.8
137,023 - GFF4769 0.89 +1.9
137,023 - GFF4769 0.89 -2.8
137,023 - GFF4769 0.89 -0.5
137,023 - GFF4769 0.89 +0.8
137,235 + -0.9
137,235 + -2.2
137,368 + GFF4770 0.11 -1.5
137,368 + GFF4770 0.11 -1.2
137,368 + GFF4770 0.11 -0.8
137,392 + GFF4770 0.12 +0.1
137,392 + GFF4770 0.12 -1.0
137,392 + GFF4770 0.12 -1.8
137,393 - GFF4770 0.13 -0.7
137,393 - GFF4770 0.13 +1.4
137,413 + GFF4770 0.14 +0.0
137,413 + GFF4770 0.14 -0.9
137,413 + GFF4770 0.14 +0.1
137,413 + GFF4770 0.14 -0.0
137,414 - GFF4770 0.14 +2.2
137,602 + GFF4770 0.28 -1.8
137,603 - GFF4770 0.28 -1.3
137,603 - GFF4770 0.28 -1.6
137,603 - GFF4770 0.28 +0.9
137,917 + GFF4770 0.52 +1.3
137,917 + GFF4770 0.52 -0.4
137,917 + GFF4770 0.52 +0.1
137,918 - GFF4770 0.52 +0.5
137,918 - GFF4770 0.52 -0.7
137,962 + GFF4770 0.56 -1.4
137,962 + GFF4770 0.56 -1.2
137,963 - GFF4770 0.56 -2.7
137,963 - GFF4770 0.56 -0.6
138,124 + GFF4770 0.68 -1.6
138,124 + GFF4770 0.68 -1.8
138,125 - GFF4770 0.68 +1.4
138,125 - GFF4770 0.68 +0.1
138,142 + GFF4770 0.69 +0.4
138,143 - GFF4770 0.69 -0.9
138,143 - GFF4770 0.69 +0.2
138,143 - GFF4770 0.69 -1.2

Or see this region's nucleotide sequence