Strain Fitness in Variovorax sp. SCN45 around GFF4717

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4715 and GFF4716 are separated by 147 nucleotidesGFF4716 and GFF4717 are separated by 10 nucleotidesGFF4717 and GFF4718 are separated by 1 nucleotidesGFF4718 and GFF4719 are separated by 16 nucleotides GFF4715 - Fatty acid hydroxylase family (carotene hydroxylase/sterol desaturase), at 77,271 to 78,401 GFF4715 GFF4716 - ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines), at 78,549 to 79,382 GFF4716 GFF4717 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 79,393 to 80,190 GFF4717 GFF4718 - ABC transporter, ATP-binding protein (cluster 3, basic aa/glutamine/opines), at 80,192 to 80,962 GFF4718 GFF4719 - hypothetical protein, at 80,979 to 81,647 GFF4719 Position (kb) 79 80 81Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 78.447 kb on - strandat 78.510 kb on + strandat 78.511 kb on - strandat 78.511 kb on - strandat 78.518 kb on + strandat 78.518 kb on + strandat 78.518 kb on + strandat 78.518 kb on + strandat 78.518 kb on + strandat 78.518 kb on + strandat 78.518 kb on + strandat 78.518 kb on + strandat 78.518 kb on + strandat 78.518 kb on + strandat 78.518 kb on + strandat 78.518 kb on + strandat 78.518 kb on + strandat 78.518 kb on + strandat 78.518 kb on + strandat 78.518 kb on + strandat 78.519 kb on - strandat 78.519 kb on - strandat 78.519 kb on - strandat 78.519 kb on - strandat 78.519 kb on - strandat 78.519 kb on - strandat 78.519 kb on - strandat 78.519 kb on - strandat 78.519 kb on - strandat 78.519 kb on - strandat 78.519 kb on - strandat 78.519 kb on - strandat 78.519 kb on - strandat 78.520 kb on + strandat 78.521 kb on - strandat 78.531 kb on + strandat 78.531 kb on + strandat 78.531 kb on + strandat 78.531 kb on + strandat 78.532 kb on - strandat 78.532 kb on - strandat 78.702 kb on + strand, within GFF4716at 78.795 kb on + strand, within GFF4716at 78.795 kb on + strand, within GFF4716at 78.795 kb on + strand, within GFF4716at 78.795 kb on + strand, within GFF4716at 78.796 kb on - strand, within GFF4716at 78.796 kb on - strand, within GFF4716at 78.927 kb on + strand, within GFF4716at 78.927 kb on + strand, within GFF4716at 78.927 kb on + strand, within GFF4716at 78.927 kb on + strand, within GFF4716at 78.927 kb on + strand, within GFF4716at 78.927 kb on + strand, within GFF4716at 78.927 kb on + strand, within GFF4716at 78.927 kb on + strand, within GFF4716at 78.927 kb on + strand, within GFF4716at 78.927 kb on + strand, within GFF4716at 78.928 kb on - strand, within GFF4716at 78.928 kb on - strand, within GFF4716at 78.928 kb on - strand, within GFF4716at 78.928 kb on - strand, within GFF4716at 78.928 kb on - strand, within GFF4716at 78.928 kb on - strand, within GFF4716at 78.928 kb on - strand, within GFF4716at 78.928 kb on - strand, within GFF4716at 79.185 kb on + strand, within GFF4716at 79.185 kb on + strand, within GFF4716at 79.185 kb on + strand, within GFF4716at 79.185 kb on + strand, within GFF4716at 79.185 kb on + strand, within GFF4716at 79.185 kb on + strand, within GFF4716at 79.185 kb on + strand, within GFF4716at 79.185 kb on + strand, within GFF4716at 79.185 kb on + strand, within GFF4716at 79.185 kb on + strand, within GFF4716at 79.185 kb on + strand, within GFF4716at 79.185 kb on + strand, within GFF4716at 79.185 kb on + strand, within GFF4716at 79.185 kb on + strand, within GFF4716at 79.185 kb on + strand, within GFF4716at 79.185 kb on + strand, within GFF4716at 79.186 kb on - strand, within GFF4716at 79.186 kb on - strand, within GFF4716at 79.186 kb on - strand, within GFF4716at 79.186 kb on - strand, within GFF4716at 79.186 kb on - strand, within GFF4716at 79.186 kb on - strand, within GFF4716at 79.186 kb on - strand, within GFF4716at 79.186 kb on - strand, within GFF4716at 79.186 kb on - strand, within GFF4716at 79.186 kb on - strand, within GFF4716at 79.186 kb on - strand, within GFF4716at 79.186 kb on - strand, within GFF4716at 79.186 kb on - strand, within GFF4716at 79.186 kb on - strand, within GFF4716at 79.186 kb on - strand, within GFF4716at 79.186 kb on - strand, within GFF4716at 79.186 kb on - strand, within GFF4716at 79.186 kb on - strand, within GFF4716at 79.203 kb on + strand, within GFF4716at 79.525 kb on + strand, within GFF4717at 79.526 kb on - strand, within GFF4717at 79.585 kb on + strand, within GFF4717at 79.585 kb on + strand, within GFF4717at 79.586 kb on - strand, within GFF4717at 79.696 kb on + strand, within GFF4717at 79.696 kb on + strand, within GFF4717at 79.696 kb on + strand, within GFF4717at 79.696 kb on + strand, within GFF4717at 79.696 kb on + strand, within GFF4717at 79.696 kb on + strand, within GFF4717at 79.696 kb on + strand, within GFF4717at 79.697 kb on - strand, within GFF4717at 79.697 kb on - strand, within GFF4717at 79.697 kb on - strand, within GFF4717at 79.747 kb on + strand, within GFF4717at 79.747 kb on + strand, within GFF4717at 79.747 kb on + strand, within GFF4717at 79.747 kb on + strand, within GFF4717at 79.747 kb on + strand, within GFF4717at 79.747 kb on + strand, within GFF4717at 79.748 kb on - strand, within GFF4717at 79.748 kb on - strand, within GFF4717at 79.748 kb on - strand, within GFF4717at 79.748 kb on - strand, within GFF4717at 79.750 kb on + strand, within GFF4717at 79.819 kb on + strand, within GFF4717at 79.834 kb on + strand, within GFF4717at 80.044 kb on + strand, within GFF4717at 80.045 kb on - strand, within GFF4717at 80.045 kb on - strand, within GFF4717at 80.074 kb on + strand, within GFF4717at 80.074 kb on + strand, within GFF4717at 80.075 kb on - strand, within GFF4717at 80.075 kb on - strand, within GFF4717at 80.075 kb on - strand, within GFF4717at 80.075 kb on - strand, within GFF4717at 80.075 kb on - strand, within GFF4717at 80.093 kb on - strand, within GFF4717at 80.093 kb on - strand, within GFF4717at 80.093 kb on - strand, within GFF4717at 80.113 kb on + strandat 80.114 kb on - strandat 80.114 kb on - strandat 80.114 kb on - strandat 80.114 kb on - strandat 80.114 kb on - strandat 80.179 kb on + strandat 80.621 kb on + strand, within GFF4718at 80.621 kb on + strand, within GFF4718at 80.622 kb on - strand, within GFF4718at 80.622 kb on - strand, within GFF4718at 80.622 kb on - strand, within GFF4718at 80.622 kb on - strand, within GFF4718at 80.960 kb on + strandat 80.961 kb on - strandat 80.961 kb on - strandat 80.961 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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78,447 - -0.8
78,510 + +0.6
78,511 - +0.4
78,511 - -1.7
78,518 + -1.7
78,518 + -0.7
78,518 + +0.3
78,518 + +0.2
78,518 + +0.2
78,518 + +1.2
78,518 + +1.2
78,518 + +0.1
78,518 + +1.5
78,518 + -0.9
78,518 + -0.3
78,518 + -1.5
78,518 + -2.4
78,518 + -0.4
78,518 + -0.1
78,518 + +0.3
78,519 - +0.4
78,519 - +0.5
78,519 - +0.5
78,519 - -0.5
78,519 - +0.1
78,519 - +0.8
78,519 - +0.6
78,519 - +0.7
78,519 - -1.8
78,519 - +1.1
78,519 - +1.2
78,519 - +0.8
78,519 - -3.5
78,520 + +0.6
78,521 - -0.2
78,531 + -1.9
78,531 + +1.3
78,531 + -0.9
78,531 + -1.9
78,532 - -1.2
78,532 - -1.2
78,702 + GFF4716 0.18 +1.0
78,795 + GFF4716 0.29 +2.4
78,795 + GFF4716 0.29 +2.9
78,795 + GFF4716 0.29 -1.0
78,795 + GFF4716 0.29 -3.7
78,796 - GFF4716 0.30 +1.4
78,796 - GFF4716 0.30 +1.2
78,927 + GFF4716 0.45 +1.2
78,927 + GFF4716 0.45 -5.3
78,927 + GFF4716 0.45 +0.1
78,927 + GFF4716 0.45 +0.5
78,927 + GFF4716 0.45 -0.5
78,927 + GFF4716 0.45 +0.0
78,927 + GFF4716 0.45 -0.7
78,927 + GFF4716 0.45 -2.9
78,927 + GFF4716 0.45 +2.5
78,927 + GFF4716 0.45 +0.8
78,928 - GFF4716 0.45 -0.3
78,928 - GFF4716 0.45 +0.8
78,928 - GFF4716 0.45 +1.1
78,928 - GFF4716 0.45 -2.3
78,928 - GFF4716 0.45 -0.6
78,928 - GFF4716 0.45 -1.9
78,928 - GFF4716 0.45 -1.8
78,928 - GFF4716 0.45 +0.1
79,185 + GFF4716 0.76 -3.1
79,185 + GFF4716 0.76 +1.0
79,185 + GFF4716 0.76 +0.1
79,185 + GFF4716 0.76 -0.8
79,185 + GFF4716 0.76 +2.7
79,185 + GFF4716 0.76 -0.4
79,185 + GFF4716 0.76 -2.1
79,185 + GFF4716 0.76 +0.6
79,185 + GFF4716 0.76 +2.5
79,185 + GFF4716 0.76 -0.8
79,185 + GFF4716 0.76 -0.7
79,185 + GFF4716 0.76 +2.2
79,185 + GFF4716 0.76 +1.5
79,185 + GFF4716 0.76 +1.2
79,185 + GFF4716 0.76 +0.7
79,185 + GFF4716 0.76 -0.4
79,186 - GFF4716 0.76 -2.1
79,186 - GFF4716 0.76 +1.4
79,186 - GFF4716 0.76 +0.9
79,186 - GFF4716 0.76 -2.7
79,186 - GFF4716 0.76 +0.9
79,186 - GFF4716 0.76 -0.7
79,186 - GFF4716 0.76 -2.7
79,186 - GFF4716 0.76 +0.2
79,186 - GFF4716 0.76 +1.7
79,186 - GFF4716 0.76 -2.3
79,186 - GFF4716 0.76 +0.1
79,186 - GFF4716 0.76 -0.1
79,186 - GFF4716 0.76 +1.3
79,186 - GFF4716 0.76 -1.9
79,186 - GFF4716 0.76 +0.4
79,186 - GFF4716 0.76 +2.4
79,186 - GFF4716 0.76 -0.9
79,186 - GFF4716 0.76 +0.8
79,203 + GFF4716 0.78 -1.7
79,525 + GFF4717 0.17 +0.1
79,526 - GFF4717 0.17 +0.1
79,585 + GFF4717 0.24 +0.7
79,585 + GFF4717 0.24 -1.9
79,586 - GFF4717 0.24 +0.7
79,696 + GFF4717 0.38 +0.5
79,696 + GFF4717 0.38 +0.9
79,696 + GFF4717 0.38 +1.1
79,696 + GFF4717 0.38 -1.5
79,696 + GFF4717 0.38 +0.1
79,696 + GFF4717 0.38 +0.4
79,696 + GFF4717 0.38 +0.1
79,697 - GFF4717 0.38 -1.0
79,697 - GFF4717 0.38 -1.1
79,697 - GFF4717 0.38 -0.6
79,747 + GFF4717 0.44 -2.3
79,747 + GFF4717 0.44 -0.9
79,747 + GFF4717 0.44 +0.2
79,747 + GFF4717 0.44 -0.3
79,747 + GFF4717 0.44 +1.9
79,747 + GFF4717 0.44 +0.4
79,748 - GFF4717 0.44 +0.6
79,748 - GFF4717 0.44 -0.7
79,748 - GFF4717 0.44 +4.5
79,748 - GFF4717 0.44 +1.6
79,750 + GFF4717 0.45 -0.5
79,819 + GFF4717 0.53 -0.9
79,834 + GFF4717 0.55 -2.4
80,044 + GFF4717 0.82 -0.5
80,045 - GFF4717 0.82 +0.2
80,045 - GFF4717 0.82 +0.2
80,074 + GFF4717 0.85 -0.0
80,074 + GFF4717 0.85 +1.8
80,075 - GFF4717 0.85 +1.6
80,075 - GFF4717 0.85 -0.0
80,075 - GFF4717 0.85 -1.2
80,075 - GFF4717 0.85 -2.7
80,075 - GFF4717 0.85 -3.0
80,093 - GFF4717 0.88 +0.1
80,093 - GFF4717 0.88 -2.3
80,093 - GFF4717 0.88 -0.8
80,113 + +0.3
80,114 - +0.8
80,114 - -2.9
80,114 - +3.0
80,114 - -0.5
80,114 - +0.9
80,179 + -2.4
80,621 + GFF4718 0.56 -2.5
80,621 + GFF4718 0.56 -1.5
80,622 - GFF4718 0.56 +0.5
80,622 - GFF4718 0.56 -0.6
80,622 - GFF4718 0.56 +0.2
80,622 - GFF4718 0.56 -3.1
80,960 + -0.9
80,961 - -0.8
80,961 - +0.8
80,961 - -1.2

Or see this region's nucleotide sequence