Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4606 and GFF4607 overlap by 4 nucleotides GFF4607 and GFF4608 are separated by 62 nucleotides GFF4608 and GFF4609 are separated by 39 nucleotides GFF4609 and GFF4610 are separated by 47 nucleotides
GFF4606 - 3-ketoacyl-CoA thiolase [fadN-fadA-fadE operon] (EC 2.3.1.16), at 247,365 to 248,561
GFF4606
GFF4607 - Putative DNA methylase, at 248,558 to 248,974
GFF4607
GFF4608 - 3-hydroxyacyl-CoA dehydrogenase [fadN-fadA-fadE operon] (EC 1.1.1.35) / Enoyl-CoA hydratase [fadN-fadA-fadE operon] (EC 4.2.1.17), at 249,037 to 251,436
GFF4608
GFF4609 - FIG00581832: hypothetical protein, at 251,476 to 251,910
GFF4609
GFF4610 - Long chain acyl-CoA dehydrogenase [fadN-fadA-fadE operon] (EC 1.3.8.8), at 251,958 to 253,754
GFF4610
Position (kb) 249
250
251
252 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 248.479 kb on + strand at 248.539 kb on + strand at 248.539 kb on + strand at 248.539 kb on + strand at 248.539 kb on + strand at 248.539 kb on + strand at 248.539 kb on + strand at 248.540 kb on - strand at 248.540 kb on - strand at 248.540 kb on - strand at 248.540 kb on - strand at 248.540 kb on - strand at 248.540 kb on - strand at 248.705 kb on + strand, within GFF4607 at 248.751 kb on + strand, within GFF4607 at 248.752 kb on - strand, within GFF4607 at 248.829 kb on + strand, within GFF4607 at 248.829 kb on + strand, within GFF4607 at 248.829 kb on + strand, within GFF4607 at 248.829 kb on + strand, within GFF4607 at 248.830 kb on - strand, within GFF4607 at 248.830 kb on - strand, within GFF4607 at 248.830 kb on - strand, within GFF4607 at 248.830 kb on - strand, within GFF4607 at 248.830 kb on - strand, within GFF4607 at 248.830 kb on - strand, within GFF4607 at 248.830 kb on - strand, within GFF4607 at 248.974 kb on + strand at 248.975 kb on - strand at 249.143 kb on + strand at 249.143 kb on + strand at 249.143 kb on + strand at 249.144 kb on - strand at 249.371 kb on + strand, within GFF4608 at 249.371 kb on + strand, within GFF4608 at 249.371 kb on + strand, within GFF4608 at 249.371 kb on + strand, within GFF4608 at 249.372 kb on - strand, within GFF4608 at 249.372 kb on - strand, within GFF4608 at 249.372 kb on - strand, within GFF4608 at 249.372 kb on - strand, within GFF4608 at 249.419 kb on + strand, within GFF4608 at 249.420 kb on - strand, within GFF4608 at 249.420 kb on - strand, within GFF4608 at 249.554 kb on + strand, within GFF4608 at 249.554 kb on + strand, within GFF4608 at 249.554 kb on + strand, within GFF4608 at 249.554 kb on + strand, within GFF4608 at 249.554 kb on + strand, within GFF4608 at 249.555 kb on - strand, within GFF4608 at 249.555 kb on - strand, within GFF4608 at 249.555 kb on - strand, within GFF4608 at 249.611 kb on + strand, within GFF4608 at 249.612 kb on - strand, within GFF4608 at 249.612 kb on - strand, within GFF4608 at 249.612 kb on - strand, within GFF4608 at 249.612 kb on - strand, within GFF4608 at 249.644 kb on + strand, within GFF4608 at 249.644 kb on + strand, within GFF4608 at 249.860 kb on + strand, within GFF4608 at 249.860 kb on + strand, within GFF4608 at 249.861 kb on - strand, within GFF4608 at 249.861 kb on - strand, within GFF4608 at 249.861 kb on - strand, within GFF4608 at 249.861 kb on - strand, within GFF4608 at 250.472 kb on + strand, within GFF4608 at 250.472 kb on + strand, within GFF4608 at 250.505 kb on + strand, within GFF4608 at 250.506 kb on - strand, within GFF4608 at 250.506 kb on - strand, within GFF4608 at 250.638 kb on - strand, within GFF4608 at 250.979 kb on + strand, within GFF4608 at 250.979 kb on + strand, within GFF4608 at 250.979 kb on + strand, within GFF4608 at 250.979 kb on + strand, within GFF4608 at 250.980 kb on - strand, within GFF4608 at 250.980 kb on - strand, within GFF4608 at 251.123 kb on + strand, within GFF4608 at 251.123 kb on + strand, within GFF4608 at 251.123 kb on + strand, within GFF4608 at 251.123 kb on + strand, within GFF4608 at 251.123 kb on + strand, within GFF4608 at 251.207 kb on + strand at 251.207 kb on + strand at 251.207 kb on + strand at 251.208 kb on - strand at 251.446 kb on + strand at 251.446 kb on + strand at 251.446 kb on + strand at 251.447 kb on - strand at 251.447 kb on - strand at 251.447 kb on - strand at 251.447 kb on - strand at 251.447 kb on - strand at 251.447 kb on - strand at 251.447 kb on - strand at 251.477 kb on + strand at 251.477 kb on + strand at 251.477 kb on + strand at 251.478 kb on - strand at 251.478 kb on - strand at 251.949 kb on + strand at 251.949 kb on + strand at 251.949 kb on + strand at 251.949 kb on + strand at 251.949 kb on + strand at 251.949 kb on + strand at 251.950 kb on - strand at 251.950 kb on - strand at 251.950 kb on - strand at 251.950 kb on - strand at 251.950 kb on - strand at 251.950 kb on - strand at 251.950 kb on - strand at 251.950 kb on - strand at 251.950 kb on - strand at 251.952 kb on + strand at 251.952 kb on + strand at 251.953 kb on - strand at 251.953 kb on - strand at 252.052 kb on + strand at 252.053 kb on - strand at 252.053 kb on - strand at 252.053 kb on - strand at 252.053 kb on - strand at 252.082 kb on + strand at 252.083 kb on - strand at 252.083 kb on - strand at 252.083 kb on - strand at 252.181 kb on + strand, within GFF4610 at 252.182 kb on - strand, within GFF4610 at 252.182 kb on - strand, within GFF4610 at 252.430 kb on + strand, within GFF4610 at 252.430 kb on + strand, within GFF4610 at 252.430 kb on + strand, within GFF4610 at 252.430 kb on + strand, within GFF4610 at 252.431 kb on - strand, within GFF4610 at 252.431 kb on - strand, within GFF4610 at 252.431 kb on - strand, within GFF4610 at 252.431 kb on - strand, within GFF4610 at 252.431 kb on - strand, within GFF4610 at 252.431 kb on - strand, within GFF4610 at 252.431 kb on - strand, within GFF4610 at 252.431 kb on - strand, within GFF4610 at 252.431 kb on - strand, within GFF4610
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 248,479 + +0.8 248,539 + +1.7 248,539 + -0.1 248,539 + -1.5 248,539 + -0.0 248,539 + -1.9 248,539 + -1.8 248,540 - +0.7 248,540 - +0.3 248,540 - +0.2 248,540 - +2.4 248,540 - +2.9 248,540 - -0.6 248,705 + GFF4607 0.35 +2.6 248,751 + GFF4607 0.46 -0.6 248,752 - GFF4607 0.47 +2.3 248,829 + GFF4607 0.65 -2.5 248,829 + GFF4607 0.65 -1.0 248,829 + GFF4607 0.65 +1.0 248,829 + GFF4607 0.65 +0.6 248,830 - GFF4607 0.65 +2.5 248,830 - GFF4607 0.65 -0.4 248,830 - GFF4607 0.65 -2.0 248,830 - GFF4607 0.65 +1.0 248,830 - GFF4607 0.65 +0.0 248,830 - GFF4607 0.65 -0.5 248,830 - GFF4607 0.65 -0.5 248,974 + +2.3 248,975 - +0.8 249,143 + -3.8 249,143 + -1.2 249,143 + -1.0 249,144 - -2.4 249,371 + GFF4608 0.14 -0.3 249,371 + GFF4608 0.14 +1.0 249,371 + GFF4608 0.14 -1.6 249,371 + GFF4608 0.14 -1.7 249,372 - GFF4608 0.14 -0.5 249,372 - GFF4608 0.14 -0.0 249,372 - GFF4608 0.14 +0.4 249,372 - GFF4608 0.14 +1.3 249,419 + GFF4608 0.16 -0.5 249,420 - GFF4608 0.16 -1.5 249,420 - GFF4608 0.16 +0.1 249,554 + GFF4608 0.22 +1.6 249,554 + GFF4608 0.22 -1.9 249,554 + GFF4608 0.22 +2.0 249,554 + GFF4608 0.22 -0.9 249,554 + GFF4608 0.22 -2.0 249,555 - GFF4608 0.22 +1.5 249,555 - GFF4608 0.22 -2.3 249,555 - GFF4608 0.22 -0.7 249,611 + GFF4608 0.24 +0.2 249,612 - GFF4608 0.24 +0.5 249,612 - GFF4608 0.24 +1.4 249,612 - GFF4608 0.24 -0.7 249,612 - GFF4608 0.24 -3.7 249,644 + GFF4608 0.25 -1.3 249,644 + GFF4608 0.25 -0.6 249,860 + GFF4608 0.34 -2.3 249,860 + GFF4608 0.34 -0.8 249,861 - GFF4608 0.34 +0.2 249,861 - GFF4608 0.34 +0.9 249,861 - GFF4608 0.34 -0.3 249,861 - GFF4608 0.34 -1.7 250,472 + GFF4608 0.60 -2.1 250,472 + GFF4608 0.60 +0.2 250,505 + GFF4608 0.61 +1.6 250,506 - GFF4608 0.61 -0.0 250,506 - GFF4608 0.61 -0.7 250,638 - GFF4608 0.67 +2.5 250,979 + GFF4608 0.81 -0.4 250,979 + GFF4608 0.81 -2.2 250,979 + GFF4608 0.81 +1.2 250,979 + GFF4608 0.81 -0.7 250,980 - GFF4608 0.81 -1.7 250,980 - GFF4608 0.81 +0.2 251,123 + GFF4608 0.87 -0.2 251,123 + GFF4608 0.87 -2.3 251,123 + GFF4608 0.87 -1.2 251,123 + GFF4608 0.87 +0.1 251,123 + GFF4608 0.87 -0.0 251,207 + -1.2 251,207 + -2.7 251,207 + -0.4 251,208 - +0.4 251,446 + -2.8 251,446 + +0.5 251,446 + -1.9 251,447 - +0.6 251,447 - -1.0 251,447 - -2.7 251,447 - -1.6 251,447 - -0.1 251,447 - -0.5 251,447 - +1.6 251,477 + +0.4 251,477 + +0.4 251,477 + -2.2 251,478 - +0.1 251,478 - +1.6 251,949 + -0.6 251,949 + +1.0 251,949 + -0.0 251,949 + -0.6 251,949 + +1.0 251,949 + -0.8 251,950 - -2.0 251,950 - +0.4 251,950 - -0.6 251,950 - -0.0 251,950 - -1.3 251,950 - +0.1 251,950 - -2.1 251,950 - -1.0 251,950 - +1.8 251,952 + -1.1 251,952 + -0.6 251,953 - -2.1 251,953 - +1.4 252,052 + -1.2 252,053 - -0.0 252,053 - -1.8 252,053 - -0.4 252,053 - -3.3 252,082 + -2.0 252,083 - -1.4 252,083 - -3.6 252,083 - -1.0 252,181 + GFF4610 0.12 -0.4 252,182 - GFF4610 0.12 +1.5 252,182 - GFF4610 0.12 -0.0 252,430 + GFF4610 0.26 -1.4 252,430 + GFF4610 0.26 +0.4 252,430 + GFF4610 0.26 -1.2 252,430 + GFF4610 0.26 -2.8 252,431 - GFF4610 0.26 -2.7 252,431 - GFF4610 0.26 -0.8 252,431 - GFF4610 0.26 -1.6 252,431 - GFF4610 0.26 +0.8 252,431 - GFF4610 0.26 -2.2 252,431 - GFF4610 0.26 -1.8 252,431 - GFF4610 0.26 -1.0 252,431 - GFF4610 0.26 -2.8 252,431 - GFF4610 0.26 -1.9
Or see this region's nucleotide sequence