Strain Fitness in Variovorax sp. SCN45 around GFF4533

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4531 and GFF4532 are separated by 140 nucleotidesGFF4532 and GFF4533 overlap by 11 nucleotidesGFF4533 and GFF4534 overlap by 4 nucleotides GFF4531 - Pseudouridine synthase, at 169,822 to 170,547 GFF4531 GFF4532 - hypothetical protein, at 170,688 to 171,233 GFF4532 GFF4533 - Multidrug resistance transporter, Bcr/CflA family, at 171,223 to 172,452 GFF4533 GFF4534 - Tetrapartite efflux system, outer membrane factor lipoprotein FusA-like, at 172,449 to 173,927 GFF4534 Position (kb) 171 172 173Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 170.521 kb on + strandat 170.522 kb on - strandat 170.522 kb on - strandat 170.522 kb on - strandat 170.522 kb on - strandat 170.757 kb on + strand, within GFF4532at 170.757 kb on + strand, within GFF4532at 170.757 kb on + strand, within GFF4532at 170.757 kb on + strand, within GFF4532at 170.757 kb on + strand, within GFF4532at 170.757 kb on + strand, within GFF4532at 170.758 kb on - strand, within GFF4532at 170.758 kb on - strand, within GFF4532at 171.106 kb on - strand, within GFF4532at 171.147 kb on + strand, within GFF4532at 171.147 kb on + strand, within GFF4532at 171.147 kb on + strand, within GFF4532at 171.147 kb on + strand, within GFF4532at 171.148 kb on - strand, within GFF4532at 171.405 kb on - strand, within GFF4533at 171.683 kb on + strand, within GFF4533at 171.683 kb on + strand, within GFF4533at 171.683 kb on + strand, within GFF4533at 171.684 kb on - strand, within GFF4533at 171.684 kb on - strand, within GFF4533at 171.684 kb on - strand, within GFF4533at 171.684 kb on - strand, within GFF4533at 171.684 kb on - strand, within GFF4533at 171.684 kb on - strand, within GFF4533at 171.755 kb on + strand, within GFF4533at 171.755 kb on + strand, within GFF4533at 171.755 kb on + strand, within GFF4533at 171.755 kb on + strand, within GFF4533at 171.755 kb on + strand, within GFF4533at 171.755 kb on + strand, within GFF4533at 171.755 kb on + strand, within GFF4533at 171.755 kb on + strand, within GFF4533at 171.756 kb on - strand, within GFF4533at 171.756 kb on - strand, within GFF4533at 171.756 kb on - strand, within GFF4533at 171.756 kb on - strand, within GFF4533at 171.756 kb on - strand, within GFF4533at 171.756 kb on - strand, within GFF4533at 171.756 kb on - strand, within GFF4533at 171.756 kb on - strand, within GFF4533at 171.827 kb on + strand, within GFF4533at 171.827 kb on + strand, within GFF4533at 171.828 kb on - strand, within GFF4533at 171.935 kb on + strand, within GFF4533at 171.935 kb on + strand, within GFF4533at 171.936 kb on - strand, within GFF4533at 171.936 kb on - strand, within GFF4533at 171.936 kb on - strand, within GFF4533at 171.936 kb on - strand, within GFF4533at 171.936 kb on - strand, within GFF4533at 172.184 kb on + strand, within GFF4533at 172.184 kb on + strand, within GFF4533at 172.185 kb on - strand, within GFF4533at 172.185 kb on - strand, within GFF4533at 172.185 kb on - strand, within GFF4533at 172.185 kb on - strand, within GFF4533at 172.185 kb on - strand, within GFF4533at 172.185 kb on - strand, within GFF4533at 172.185 kb on - strand, within GFF4533at 172.185 kb on - strand, within GFF4533at 172.244 kb on + strand, within GFF4533at 172.245 kb on - strand, within GFF4533at 172.245 kb on - strand, within GFF4533at 172.245 kb on - strand, within GFF4533at 172.277 kb on + strand, within GFF4533at 172.277 kb on + strand, within GFF4533at 172.277 kb on + strand, within GFF4533at 172.277 kb on + strand, within GFF4533at 172.277 kb on + strand, within GFF4533at 172.277 kb on + strand, within GFF4533at 172.277 kb on + strand, within GFF4533at 172.277 kb on + strand, within GFF4533at 172.277 kb on + strand, within GFF4533at 172.277 kb on + strand, within GFF4533at 172.278 kb on - strand, within GFF4533at 172.278 kb on - strand, within GFF4533at 172.278 kb on - strand, within GFF4533at 172.278 kb on - strand, within GFF4533at 172.648 kb on + strand, within GFF4534at 172.649 kb on - strand, within GFF4534at 172.649 kb on - strand, within GFF4534at 172.732 kb on + strand, within GFF4534at 172.732 kb on + strand, within GFF4534at 172.732 kb on + strand, within GFF4534at 172.733 kb on - strand, within GFF4534at 172.733 kb on - strand, within GFF4534at 172.733 kb on - strand, within GFF4534at 172.733 kb on - strand, within GFF4534at 172.733 kb on - strand, within GFF4534at 172.733 kb on - strand, within GFF4534at 172.733 kb on - strand, within GFF4534at 172.733 kb on - strand, within GFF4534at 172.733 kb on - strand, within GFF4534at 172.733 kb on - strand, within GFF4534at 172.733 kb on - strand, within GFF4534at 172.733 kb on - strand, within GFF4534at 172.733 kb on - strand, within GFF4534at 172.733 kb on - strand, within GFF4534at 172.733 kb on - strand, within GFF4534at 172.733 kb on - strand, within GFF4534at 172.733 kb on - strand, within GFF4534at 172.966 kb on + strand, within GFF4534at 172.966 kb on + strand, within GFF4534at 173.167 kb on + strand, within GFF4534at 173.168 kb on - strand, within GFF4534at 173.369 kb on - strand, within GFF4534at 173.369 kb on - strand, within GFF4534

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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170,521 + +0.7
170,522 - +0.7
170,522 - +0.6
170,522 - -0.2
170,522 - +0.7
170,757 + GFF4532 0.13 -3.6
170,757 + GFF4532 0.13 -2.0
170,757 + GFF4532 0.13 +0.6
170,757 + GFF4532 0.13 -1.6
170,757 + GFF4532 0.13 +1.6
170,757 + GFF4532 0.13 -2.6
170,758 - GFF4532 0.13 -2.6
170,758 - GFF4532 0.13 +0.0
171,106 - GFF4532 0.77 -2.6
171,147 + GFF4532 0.84 -0.9
171,147 + GFF4532 0.84 +0.3
171,147 + GFF4532 0.84 -4.2
171,147 + GFF4532 0.84 +2.5
171,148 - GFF4532 0.84 -0.4
171,405 - GFF4533 0.15 -0.0
171,683 + GFF4533 0.37 +1.6
171,683 + GFF4533 0.37 +0.2
171,683 + GFF4533 0.37 -1.2
171,684 - GFF4533 0.37 -0.2
171,684 - GFF4533 0.37 -2.6
171,684 - GFF4533 0.37 +0.2
171,684 - GFF4533 0.37 -4.0
171,684 - GFF4533 0.37 -1.9
171,684 - GFF4533 0.37 -0.6
171,755 + GFF4533 0.43 +1.7
171,755 + GFF4533 0.43 -1.6
171,755 + GFF4533 0.43 -0.0
171,755 + GFF4533 0.43 -3.2
171,755 + GFF4533 0.43 -2.3
171,755 + GFF4533 0.43 -0.1
171,755 + GFF4533 0.43 +0.8
171,755 + GFF4533 0.43 +1.4
171,756 - GFF4533 0.43 -1.4
171,756 - GFF4533 0.43 +1.3
171,756 - GFF4533 0.43 -0.5
171,756 - GFF4533 0.43 -1.2
171,756 - GFF4533 0.43 -1.3
171,756 - GFF4533 0.43 +4.1
171,756 - GFF4533 0.43 -1.6
171,756 - GFF4533 0.43 -3.1
171,827 + GFF4533 0.49 -1.0
171,827 + GFF4533 0.49 -0.4
171,828 - GFF4533 0.49 +0.7
171,935 + GFF4533 0.58 -4.0
171,935 + GFF4533 0.58 -2.3
171,936 - GFF4533 0.58 -1.2
171,936 - GFF4533 0.58 -0.4
171,936 - GFF4533 0.58 +2.1
171,936 - GFF4533 0.58 -0.4
171,936 - GFF4533 0.58 -1.4
172,184 + GFF4533 0.78 -1.0
172,184 + GFF4533 0.78 +0.4
172,185 - GFF4533 0.78 -2.6
172,185 - GFF4533 0.78 -1.4
172,185 - GFF4533 0.78 -1.7
172,185 - GFF4533 0.78 -2.7
172,185 - GFF4533 0.78 -4.2
172,185 - GFF4533 0.78 +1.2
172,185 - GFF4533 0.78 +0.0
172,185 - GFF4533 0.78 -1.0
172,244 + GFF4533 0.83 -0.8
172,245 - GFF4533 0.83 +2.8
172,245 - GFF4533 0.83 -2.7
172,245 - GFF4533 0.83 +3.7
172,277 + GFF4533 0.86 -0.4
172,277 + GFF4533 0.86 -0.4
172,277 + GFF4533 0.86 -0.6
172,277 + GFF4533 0.86 -0.7
172,277 + GFF4533 0.86 -1.1
172,277 + GFF4533 0.86 -0.4
172,277 + GFF4533 0.86 +0.5
172,277 + GFF4533 0.86 -1.1
172,277 + GFF4533 0.86 -2.8
172,277 + GFF4533 0.86 -2.0
172,278 - GFF4533 0.86 +1.8
172,278 - GFF4533 0.86 +0.4
172,278 - GFF4533 0.86 -0.5
172,278 - GFF4533 0.86 -2.2
172,648 + GFF4534 0.13 -0.0
172,649 - GFF4534 0.14 -0.4
172,649 - GFF4534 0.14 -0.5
172,732 + GFF4534 0.19 -2.3
172,732 + GFF4534 0.19 +1.9
172,732 + GFF4534 0.19 +1.0
172,733 - GFF4534 0.19 -0.6
172,733 - GFF4534 0.19 -2.6
172,733 - GFF4534 0.19 -1.3
172,733 - GFF4534 0.19 +0.7
172,733 - GFF4534 0.19 +1.6
172,733 - GFF4534 0.19 +0.3
172,733 - GFF4534 0.19 +0.4
172,733 - GFF4534 0.19 -0.4
172,733 - GFF4534 0.19 -1.7
172,733 - GFF4534 0.19 -2.4
172,733 - GFF4534 0.19 -2.7
172,733 - GFF4534 0.19 +0.4
172,733 - GFF4534 0.19 +2.8
172,733 - GFF4534 0.19 -0.2
172,733 - GFF4534 0.19 -1.1
172,733 - GFF4534 0.19 -0.4
172,733 - GFF4534 0.19 -1.7
172,966 + GFF4534 0.35 -1.5
172,966 + GFF4534 0.35 +1.0
173,167 + GFF4534 0.49 -1.5
173,168 - GFF4534 0.49 +3.4
173,369 - GFF4534 0.62 -0.1
173,369 - GFF4534 0.62 +1.4

Or see this region's nucleotide sequence