Strain Fitness in Variovorax sp. SCN45 around GFF4418

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4417 and GFF4418 overlap by 4 nucleotidesGFF4418 and GFF4419 are separated by 12 nucleotidesGFF4419 and GFF4420 overlap by 4 nucleotides GFF4417 - Conjugative transfer protein TrbE, at 52,682 to 55,156 GFF4417 GFF4418 - Conjugative transfer protein TrbJ, at 55,153 to 55,908 GFF4418 GFF4419 - Conjugative transfer protein TrbK, at 55,921 to 56,205 GFF4419 GFF4420 - Conjugative transfer protein TrbL, at 56,202 to 57,581 GFF4420 Position (kb) 55 56Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 54.161 kb on + strand, within GFF4417at 54.161 kb on + strand, within GFF4417at 54.162 kb on - strand, within GFF4417at 54.162 kb on - strand, within GFF4417at 54.162 kb on - strand, within GFF4417at 54.162 kb on - strand, within GFF4417at 54.225 kb on - strand, within GFF4417at 54.261 kb on + strand, within GFF4417at 54.261 kb on + strand, within GFF4417at 54.261 kb on + strand, within GFF4417at 54.261 kb on + strand, within GFF4417at 54.261 kb on + strand, within GFF4417at 54.261 kb on + strand, within GFF4417at 54.261 kb on + strand, within GFF4417at 54.261 kb on + strand, within GFF4417at 54.261 kb on + strand, within GFF4417at 54.261 kb on + strand, within GFF4417at 54.264 kb on + strand, within GFF4417at 54.264 kb on + strand, within GFF4417at 54.264 kb on + strand, within GFF4417at 54.264 kb on + strand, within GFF4417at 54.264 kb on + strand, within GFF4417at 54.264 kb on + strand, within GFF4417at 54.265 kb on - strand, within GFF4417at 54.265 kb on - strand, within GFF4417at 54.265 kb on - strand, within GFF4417at 54.276 kb on + strand, within GFF4417at 54.276 kb on + strand, within GFF4417at 54.276 kb on + strand, within GFF4417at 54.276 kb on + strand, within GFF4417at 54.276 kb on + strand, within GFF4417at 54.276 kb on + strand, within GFF4417at 54.276 kb on + strand, within GFF4417at 54.277 kb on - strand, within GFF4417at 54.277 kb on - strand, within GFF4417at 54.277 kb on - strand, within GFF4417at 54.277 kb on - strand, within GFF4417at 54.413 kb on + strand, within GFF4417at 54.413 kb on + strand, within GFF4417at 54.414 kb on - strand, within GFF4417at 54.414 kb on - strand, within GFF4417at 54.414 kb on - strand, within GFF4417at 54.414 kb on - strand, within GFF4417at 54.414 kb on - strand, within GFF4417at 54.414 kb on - strand, within GFF4417at 54.414 kb on - strand, within GFF4417at 54.414 kb on - strand, within GFF4417at 54.414 kb on - strand, within GFF4417at 54.414 kb on - strand, within GFF4417at 54.542 kb on + strand, within GFF4417at 54.542 kb on + strand, within GFF4417at 54.542 kb on + strand, within GFF4417at 54.542 kb on + strand, within GFF4417at 54.542 kb on + strand, within GFF4417at 54.542 kb on + strand, within GFF4417at 54.542 kb on + strand, within GFF4417at 54.542 kb on + strand, within GFF4417at 54.542 kb on + strand, within GFF4417at 54.542 kb on + strand, within GFF4417at 54.542 kb on + strand, within GFF4417at 54.542 kb on + strand, within GFF4417at 54.542 kb on + strand, within GFF4417at 54.542 kb on + strand, within GFF4417at 54.589 kb on - strand, within GFF4417at 54.589 kb on - strand, within GFF4417at 54.589 kb on - strand, within GFF4417at 54.593 kb on - strand, within GFF4417at 54.815 kb on + strand, within GFF4417at 54.815 kb on + strand, within GFF4417at 54.815 kb on + strand, within GFF4417at 54.815 kb on + strand, within GFF4417at 54.815 kb on + strand, within GFF4417at 54.815 kb on + strand, within GFF4417at 54.881 kb on + strand, within GFF4417at 54.881 kb on + strand, within GFF4417at 54.881 kb on + strand, within GFF4417at 54.881 kb on + strand, within GFF4417at 54.881 kb on + strand, within GFF4417at 54.881 kb on + strand, within GFF4417at 54.881 kb on + strand, within GFF4417at 54.882 kb on - strand, within GFF4417at 54.882 kb on - strand, within GFF4417at 54.882 kb on - strand, within GFF4417at 54.882 kb on - strand, within GFF4417at 54.882 kb on - strand, within GFF4417at 54.882 kb on - strand, within GFF4417at 54.882 kb on - strand, within GFF4417at 55.002 kb on + strandat 55.003 kb on - strandat 55.164 kb on + strandat 55.164 kb on + strandat 55.165 kb on - strandat 55.165 kb on - strandat 55.468 kb on + strand, within GFF4418at 55.468 kb on + strand, within GFF4418at 55.468 kb on + strand, within GFF4418at 55.468 kb on + strand, within GFF4418at 55.468 kb on + strand, within GFF4418at 55.508 kb on - strand, within GFF4418at 55.519 kb on + strand, within GFF4418at 55.519 kb on + strand, within GFF4418at 55.519 kb on + strand, within GFF4418at 55.519 kb on + strand, within GFF4418at 55.519 kb on + strand, within GFF4418at 55.520 kb on - strand, within GFF4418at 55.520 kb on - strand, within GFF4418at 55.520 kb on - strand, within GFF4418at 55.520 kb on - strand, within GFF4418at 55.520 kb on - strand, within GFF4418at 55.520 kb on - strand, within GFF4418at 55.520 kb on - strand, within GFF4418at 55.549 kb on + strand, within GFF4418at 55.549 kb on + strand, within GFF4418at 55.549 kb on + strand, within GFF4418at 55.549 kb on + strand, within GFF4418at 55.549 kb on + strand, within GFF4418at 55.549 kb on + strand, within GFF4418at 55.549 kb on + strand, within GFF4418at 55.549 kb on + strand, within GFF4418at 55.550 kb on - strand, within GFF4418at 55.550 kb on - strand, within GFF4418at 55.550 kb on - strand, within GFF4418at 55.550 kb on - strand, within GFF4418at 55.550 kb on - strand, within GFF4418at 55.550 kb on - strand, within GFF4418at 55.550 kb on - strand, within GFF4418at 55.550 kb on - strand, within GFF4418at 55.550 kb on - strand, within GFF4418at 55.550 kb on - strand, within GFF4418at 55.550 kb on - strand, within GFF4418at 55.550 kb on - strand, within GFF4418at 55.550 kb on - strand, within GFF4418at 55.550 kb on - strand, within GFF4418at 55.550 kb on - strand, within GFF4418at 55.733 kb on + strand, within GFF4418at 55.733 kb on + strand, within GFF4418at 55.734 kb on - strand, within GFF4418at 55.766 kb on + strand, within GFF4418at 55.767 kb on - strand, within GFF4418at 55.873 kb on + strandat 55.873 kb on + strandat 55.873 kb on + strandat 55.873 kb on + strandat 55.874 kb on - strandat 55.874 kb on - strandat 55.897 kb on + strandat 55.897 kb on + strandat 55.898 kb on - strandat 56.141 kb on - strand, within GFF4419at 56.246 kb on + strandat 56.246 kb on + strandat 56.246 kb on + strandat 56.246 kb on + strandat 56.246 kb on + strandat 56.246 kb on + strandat 56.246 kb on + strandat 56.247 kb on - strandat 56.247 kb on - strandat 56.250 kb on + strandat 56.250 kb on + strandat 56.250 kb on + strandat 56.250 kb on + strandat 56.250 kb on + strandat 56.250 kb on + strandat 56.250 kb on + strandat 56.250 kb on + strandat 56.250 kb on + strandat 56.250 kb on + strandat 56.251 kb on - strandat 56.251 kb on - strandat 56.251 kb on - strandat 56.251 kb on - strandat 56.251 kb on - strandat 56.251 kb on - strandat 56.251 kb on - strandat 56.251 kb on - strandat 56.251 kb on - strandat 56.251 kb on - strandat 56.340 kb on + strand, within GFF4420at 56.340 kb on + strand, within GFF4420at 56.340 kb on + strand, within GFF4420at 56.340 kb on + strand, within GFF4420at 56.340 kb on + strand, within GFF4420at 56.340 kb on + strand, within GFF4420at 56.341 kb on - strand, within GFF4420at 56.341 kb on - strand, within GFF4420at 56.341 kb on - strand, within GFF4420at 56.409 kb on + strand, within GFF4420at 56.409 kb on + strand, within GFF4420at 56.409 kb on + strand, within GFF4420at 56.409 kb on + strand, within GFF4420at 56.409 kb on + strand, within GFF4420at 56.409 kb on + strand, within GFF4420at 56.409 kb on + strand, within GFF4420at 56.410 kb on - strand, within GFF4420at 56.410 kb on - strand, within GFF4420at 56.410 kb on - strand, within GFF4420at 56.427 kb on + strand, within GFF4420at 56.427 kb on + strand, within GFF4420at 56.427 kb on + strand, within GFF4420at 56.427 kb on + strand, within GFF4420at 56.427 kb on + strand, within GFF4420at 56.427 kb on + strand, within GFF4420at 56.427 kb on + strand, within GFF4420at 56.427 kb on + strand, within GFF4420at 56.428 kb on - strand, within GFF4420at 56.428 kb on - strand, within GFF4420at 56.428 kb on - strand, within GFF4420at 56.428 kb on - strand, within GFF4420at 56.428 kb on - strand, within GFF4420at 56.428 kb on - strand, within GFF4420at 56.428 kb on - strand, within GFF4420at 56.428 kb on - strand, within GFF4420at 56.428 kb on - strand, within GFF4420at 56.428 kb on - strand, within GFF4420at 56.560 kb on + strand, within GFF4420at 56.560 kb on + strand, within GFF4420at 56.560 kb on + strand, within GFF4420at 56.560 kb on + strand, within GFF4420at 56.560 kb on + strand, within GFF4420at 56.560 kb on + strand, within GFF4420at 56.561 kb on - strand, within GFF4420at 56.561 kb on - strand, within GFF4420at 56.860 kb on + strand, within GFF4420at 56.860 kb on + strand, within GFF4420at 56.860 kb on + strand, within GFF4420at 56.861 kb on - strand, within GFF4420at 56.861 kb on - strand, within GFF4420

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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54,161 + GFF4417 0.60 +2.1
54,161 + GFF4417 0.60 -0.8
54,162 - GFF4417 0.60 -0.4
54,162 - GFF4417 0.60 -0.0
54,162 - GFF4417 0.60 -0.3
54,162 - GFF4417 0.60 -0.0
54,225 - GFF4417 0.62 -3.1
54,261 + GFF4417 0.64 -0.4
54,261 + GFF4417 0.64 -1.8
54,261 + GFF4417 0.64 -0.1
54,261 + GFF4417 0.64 -1.6
54,261 + GFF4417 0.64 +1.9
54,261 + GFF4417 0.64 -0.6
54,261 + GFF4417 0.64 +0.8
54,261 + GFF4417 0.64 -1.7
54,261 + GFF4417 0.64 -0.3
54,261 + GFF4417 0.64 +0.4
54,264 + GFF4417 0.64 +2.4
54,264 + GFF4417 0.64 +0.4
54,264 + GFF4417 0.64 +1.2
54,264 + GFF4417 0.64 -2.4
54,264 + GFF4417 0.64 -3.3
54,264 + GFF4417 0.64 -1.6
54,265 - GFF4417 0.64 -0.0
54,265 - GFF4417 0.64 -1.0
54,265 - GFF4417 0.64 -0.3
54,276 + GFF4417 0.64 -1.1
54,276 + GFF4417 0.64 -2.4
54,276 + GFF4417 0.64 -0.6
54,276 + GFF4417 0.64 +1.1
54,276 + GFF4417 0.64 +2.0
54,276 + GFF4417 0.64 -0.9
54,276 + GFF4417 0.64 +2.0
54,277 - GFF4417 0.64 -0.2
54,277 - GFF4417 0.64 -1.0
54,277 - GFF4417 0.64 +0.1
54,277 - GFF4417 0.64 -2.1
54,413 + GFF4417 0.70 -0.6
54,413 + GFF4417 0.70 -4.3
54,414 - GFF4417 0.70 -1.7
54,414 - GFF4417 0.70 -0.6
54,414 - GFF4417 0.70 +0.3
54,414 - GFF4417 0.70 +1.1
54,414 - GFF4417 0.70 -0.5
54,414 - GFF4417 0.70 +1.6
54,414 - GFF4417 0.70 +1.0
54,414 - GFF4417 0.70 -2.3
54,414 - GFF4417 0.70 +0.2
54,414 - GFF4417 0.70 +0.6
54,542 + GFF4417 0.75 -0.4
54,542 + GFF4417 0.75 -0.4
54,542 + GFF4417 0.75 -2.0
54,542 + GFF4417 0.75 +1.6
54,542 + GFF4417 0.75 +0.1
54,542 + GFF4417 0.75 -0.1
54,542 + GFF4417 0.75 -3.6
54,542 + GFF4417 0.75 -1.9
54,542 + GFF4417 0.75 +0.4
54,542 + GFF4417 0.75 -2.4
54,542 + GFF4417 0.75 -0.4
54,542 + GFF4417 0.75 +0.6
54,542 + GFF4417 0.75 -0.4
54,542 + GFF4417 0.75 -0.6
54,589 - GFF4417 0.77 -1.8
54,589 - GFF4417 0.77 -0.2
54,589 - GFF4417 0.77 +0.4
54,593 - GFF4417 0.77 -0.1
54,815 + GFF4417 0.86 -2.6
54,815 + GFF4417 0.86 -0.3
54,815 + GFF4417 0.86 -1.0
54,815 + GFF4417 0.86 +0.5
54,815 + GFF4417 0.86 +1.2
54,815 + GFF4417 0.86 -2.6
54,881 + GFF4417 0.89 -3.3
54,881 + GFF4417 0.89 -3.0
54,881 + GFF4417 0.89 -0.3
54,881 + GFF4417 0.89 -0.7
54,881 + GFF4417 0.89 -0.7
54,881 + GFF4417 0.89 +3.7
54,881 + GFF4417 0.89 -2.4
54,882 - GFF4417 0.89 +0.2
54,882 - GFF4417 0.89 -3.0
54,882 - GFF4417 0.89 +0.2
54,882 - GFF4417 0.89 -0.1
54,882 - GFF4417 0.89 -0.6
54,882 - GFF4417 0.89 -0.0
54,882 - GFF4417 0.89 -0.3
55,002 + -2.0
55,003 - -2.2
55,164 + -0.0
55,164 + -0.3
55,165 - -1.5
55,165 - -1.2
55,468 + GFF4418 0.42 +0.4
55,468 + GFF4418 0.42 +0.3
55,468 + GFF4418 0.42 -1.0
55,468 + GFF4418 0.42 -1.6
55,468 + GFF4418 0.42 +3.7
55,508 - GFF4418 0.47 -0.6
55,519 + GFF4418 0.48 +1.9
55,519 + GFF4418 0.48 +0.2
55,519 + GFF4418 0.48 -0.7
55,519 + GFF4418 0.48 +1.3
55,519 + GFF4418 0.48 +2.3
55,520 - GFF4418 0.49 -2.7
55,520 - GFF4418 0.49 +0.0
55,520 - GFF4418 0.49 -0.1
55,520 - GFF4418 0.49 +0.4
55,520 - GFF4418 0.49 +0.8
55,520 - GFF4418 0.49 -0.8
55,520 - GFF4418 0.49 +1.3
55,549 + GFF4418 0.52 -0.6
55,549 + GFF4418 0.52 -2.3
55,549 + GFF4418 0.52 -1.9
55,549 + GFF4418 0.52 -1.4
55,549 + GFF4418 0.52 +0.4
55,549 + GFF4418 0.52 +2.0
55,549 + GFF4418 0.52 +2.0
55,549 + GFF4418 0.52 +1.6
55,550 - GFF4418 0.53 -0.8
55,550 - GFF4418 0.53 -1.2
55,550 - GFF4418 0.53 +1.4
55,550 - GFF4418 0.53 -0.3
55,550 - GFF4418 0.53 -0.0
55,550 - GFF4418 0.53 -2.4
55,550 - GFF4418 0.53 -0.4
55,550 - GFF4418 0.53 +0.3
55,550 - GFF4418 0.53 -1.0
55,550 - GFF4418 0.53 -0.9
55,550 - GFF4418 0.53 -0.1
55,550 - GFF4418 0.53 -0.5
55,550 - GFF4418 0.53 -3.1
55,550 - GFF4418 0.53 -2.1
55,550 - GFF4418 0.53 -1.0
55,733 + GFF4418 0.77 -2.5
55,733 + GFF4418 0.77 -1.9
55,734 - GFF4418 0.77 -2.9
55,766 + GFF4418 0.81 +0.3
55,767 - GFF4418 0.81 -0.0
55,873 + -0.0
55,873 + +1.8
55,873 + +1.0
55,873 + +1.0
55,874 - +1.1
55,874 - +2.0
55,897 + -0.1
55,897 + -2.5
55,898 - -0.5
56,141 - GFF4419 0.77 -1.6
56,246 + -0.6
56,246 + +0.2
56,246 + -1.1
56,246 + -1.9
56,246 + +2.9
56,246 + +0.1
56,246 + -0.1
56,247 - -0.3
56,247 - -0.1
56,250 + -0.3
56,250 + -1.7
56,250 + +0.4
56,250 + +1.7
56,250 + +2.2
56,250 + +0.2
56,250 + -0.4
56,250 + -0.8
56,250 + +0.9
56,250 + +0.4
56,251 - -1.1
56,251 - -0.6
56,251 - -2.4
56,251 - -0.0
56,251 - -2.9
56,251 - -1.7
56,251 - -3.0
56,251 - -1.5
56,251 - -1.1
56,251 - -1.4
56,340 + GFF4420 0.10 +0.1
56,340 + GFF4420 0.10 -2.9
56,340 + GFF4420 0.10 +2.0
56,340 + GFF4420 0.10 -0.8
56,340 + GFF4420 0.10 +0.8
56,340 + GFF4420 0.10 -2.1
56,341 - GFF4420 0.10 +1.5
56,341 - GFF4420 0.10 +0.6
56,341 - GFF4420 0.10 +0.6
56,409 + GFF4420 0.15 -1.6
56,409 + GFF4420 0.15 -0.7
56,409 + GFF4420 0.15 +1.0
56,409 + GFF4420 0.15 -1.8
56,409 + GFF4420 0.15 -1.0
56,409 + GFF4420 0.15 -2.6
56,409 + GFF4420 0.15 -2.9
56,410 - GFF4420 0.15 -0.4
56,410 - GFF4420 0.15 +0.2
56,410 - GFF4420 0.15 -1.0
56,427 + GFF4420 0.16 +1.6
56,427 + GFF4420 0.16 -2.3
56,427 + GFF4420 0.16 -2.6
56,427 + GFF4420 0.16 -1.5
56,427 + GFF4420 0.16 +2.3
56,427 + GFF4420 0.16 -2.9
56,427 + GFF4420 0.16 -1.7
56,427 + GFF4420 0.16 +2.7
56,428 - GFF4420 0.16 -1.2
56,428 - GFF4420 0.16 -0.3
56,428 - GFF4420 0.16 +0.9
56,428 - GFF4420 0.16 -1.6
56,428 - GFF4420 0.16 +0.9
56,428 - GFF4420 0.16 -1.7
56,428 - GFF4420 0.16 -0.1
56,428 - GFF4420 0.16 -3.0
56,428 - GFF4420 0.16 -1.4
56,428 - GFF4420 0.16 +2.0
56,560 + GFF4420 0.26 +0.1
56,560 + GFF4420 0.26 +0.4
56,560 + GFF4420 0.26 -0.2
56,560 + GFF4420 0.26 +0.2
56,560 + GFF4420 0.26 -1.4
56,560 + GFF4420 0.26 -1.1
56,561 - GFF4420 0.26 +1.0
56,561 - GFF4420 0.26 -0.0
56,860 + GFF4420 0.48 -0.0
56,860 + GFF4420 0.48 +0.9
56,860 + GFF4420 0.48 +2.0
56,861 - GFF4420 0.48 -0.4
56,861 - GFF4420 0.48 +2.7

Or see this region's nucleotide sequence