Strain Fitness in Variovorax sp. SCN45 around GFF4387

Experiment: Community=guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=guar; Passage=4
14,970	+		GFF4385	0.52	-1.9
14,970	+		GFF4385	0.52	-0.0
14,970	+		GFF4385	0.52	-2.1
14,970	+		GFF4385	0.52	+1.0
14,970	+		GFF4385	0.52	-1.5
14,970	+		GFF4385	0.52	+0.8
14,970	+		GFF4385	0.52	+1.0
14,977	+		GFF4385	0.53	-1.6
14,977	+		GFF4385	0.53	-3.2
14,977	+		GFF4385	0.53	+0.0
14,977	+		GFF4385	0.53	+0.4
15,078	+		GFF4385	0.69	-2.5
15,078	+		GFF4385	0.69	-0.4
15,078	+		GFF4385	0.69	-0.3
15,078	+		GFF4385	0.69	-0.7
15,079	-		GFF4385	0.69	-0.2
15,079	-		GFF4385	0.69	-3.6
15,079	-		GFF4385	0.69	-0.2
15,079	-		GFF4385	0.69	+0.2
15,079	-		GFF4385	0.69	-1.3
15,079	-		GFF4385	0.69	+0.7
15,311	+		GFF4386	0.13	-1.8
15,311	+		GFF4386	0.13	+1.4
15,311	+		GFF4386	0.13	-0.6
15,312	-		GFF4386	0.14	+1.6
15,312	-		GFF4386	0.14	-2.4
15,408	+		GFF4386	0.47	-2.9
15,408	+		GFF4386	0.47	-0.2
15,408	+		GFF4386	0.47	+0.3
15,408	+		GFF4386	0.47	+0.8
15,408	+		GFF4386	0.47	+0.3
15,408	+		GFF4386	0.47	-0.0
15,409	-		GFF4386	0.48	+0.5
15,409	-		GFF4386	0.48	-2.0
15,606	+				-0.3
15,606	+				-2.6
15,606	+				-2.9
15,606	+				-0.6
15,606	+				+0.5
15,606	+				-2.2
15,606	+				+0.3
15,606	+				-0.9
15,606	+				-0.4
15,606	+				+0.7
15,606	+				+1.2
15,606	+				-1.6
15,606	+				-2.2
15,606	+				-0.9
15,607	-				-1.4
15,607	-				+1.8
15,607	-				+0.5
15,607	-				+1.8
15,607	-				-0.6
15,607	-				+0.0
15,607	-				-2.6
15,607	-				-0.6
15,607	-				-0.6
15,619	-		GFF4387	0.12	+1.4
15,692	+		GFF4387	0.25	-0.6
15,692	+		GFF4387	0.25	-2.9
15,692	+		GFF4387	0.25	+0.4
15,692	+		GFF4387	0.25	+0.6
15,692	+		GFF4387	0.25	-0.1
15,693	-		GFF4387	0.25	-3.0
15,693	-		GFF4387	0.25	-1.0
15,693	-		GFF4387	0.25	-0.1
15,693	-		GFF4387	0.25	-2.9
15,693	-		GFF4387	0.25	-0.4
15,693	-		GFF4387	0.25	+0.3
15,693	-		GFF4387	0.25	-0.4
15,804	-		GFF4387	0.46	-1.0
15,998	+		GFF4387	0.81	+1.4
15,998	+		GFF4387	0.81	-0.6
15,999	-		GFF4387	0.82	-0.0
16,049	+				-1.0
16,049	+				+1.3
16,049	+				-0.8
16,049	+				-1.0
16,049	+				+0.5
16,049	+				-0.8
16,049	+				-0.6
16,049	+				-0.9
16,050	-				-4.7
16,050	-				-0.7
16,050	-				+0.1
16,050	-				-2.6
16,250	-		GFF4388	0.26	-0.5
16,250	-		GFF4388	0.26	-1.6
16,250	-		GFF4388	0.26	-1.7
16,250	-		GFF4388	0.26	+1.5
16,250	-		GFF4388	0.26	+2.0
16,250	-		GFF4388	0.26	-0.3
16,250	-		GFF4388	0.26	+0.3
16,250	-		GFF4388	0.26	+0.6
16,250	-		GFF4388	0.26	+1.7
16,250	-		GFF4388	0.26	+0.0
16,250	-		GFF4388	0.26	+0.2
16,250	-		GFF4388	0.26	-1.8
16,250	-		GFF4388	0.26	+0.8
16,250	-		GFF4388	0.26	-1.5
16,400	-		GFF4388	0.51	-0.0
16,400	-		GFF4388	0.51	-1.0
16,400	-		GFF4388	0.51	-1.0
16,400	-		GFF4388	0.51	+4.1
16,400	-		GFF4388	0.51	+0.4
16,478	+		GFF4388	0.64	-1.5
16,478	+		GFF4388	0.64	-0.8
16,478	+		GFF4388	0.64	-1.8
16,478	+		GFF4388	0.64	+2.5
16,478	+		GFF4388	0.64	+2.0
16,478	+		GFF4388	0.64	-1.1
16,479	-		GFF4388	0.64	+1.0
16,479	-		GFF4388	0.64	+0.9
16,479	-		GFF4388	0.64	+1.1
16,479	-		GFF4388	0.64	+1.4
16,479	-		GFF4388	0.64	+0.7
16,516	-		GFF4388	0.70	+0.5
16,726	+				-2.2
16,726	+				+1.5
16,726	+				+1.5
16,726	+				-1.4
16,726	+				-0.7
16,726	+				+0.4
16,727	-				+2.7
16,727	-				-2.5
16,727	-				+0.3
16,727	-				-3.6
16,727	-				+0.1
16,727	-				-0.1
16,859	+				+1.3
16,859	+				-1.1
16,859	+				-0.0
16,859	+				-0.5
16,859	+				-1.3
16,859	+				-0.8
16,860	-				-0.9
16,860	-				+0.3
16,860	-				-1.7
17,049	+				+1.7
17,049	+				+0.0
17,050	-				+0.2
17,050	-				-1.8