Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4273 and GFF4274 are separated by 35 nucleotides GFF4274 and GFF4275 are separated by 60 nucleotides GFF4275 and GFF4276 are separated by 118 nucleotides GFF4276 and GFF4277 are separated by 12 nucleotides GFF4277 and GFF4278 are separated by 30 nucleotides
GFF4273 - BUG/TctC family periplasmic protein, at 193,291 to 194,259
GFF4273
GFF4274 - Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases, at 194,295 to 195,011
GFF4274
GFF4275 - 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases, at 195,072 to 196,718
GFF4275
GFF4276 - no description, at 196,837 to 197,010
GFF4276
GFF4277 - Small subunit naph/bph dioxygenase, at 197,023 to 197,607
GFF4277
GFF4278 - Putative short-chain dehydrogenase, at 197,638 to 198,438
GFF4278
Position (kb) 195
196
197 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 194.276 kb on + strand at 194.276 kb on + strand at 194.276 kb on + strand at 194.277 kb on - strand at 194.277 kb on - strand at 194.277 kb on - strand at 194.277 kb on - strand at 194.278 kb on + strand at 194.445 kb on + strand, within GFF4274 at 194.605 kb on + strand, within GFF4274 at 194.605 kb on + strand, within GFF4274 at 194.606 kb on - strand, within GFF4274 at 194.606 kb on - strand, within GFF4274 at 194.798 kb on + strand, within GFF4274 at 194.852 kb on - strand, within GFF4274 at 194.879 kb on - strand, within GFF4274 at 195.299 kb on - strand, within GFF4275 at 195.448 kb on + strand, within GFF4275 at 195.448 kb on + strand, within GFF4275 at 195.448 kb on + strand, within GFF4275 at 195.449 kb on - strand, within GFF4275 at 195.451 kb on + strand, within GFF4275 at 195.452 kb on - strand, within GFF4275 at 195.452 kb on - strand, within GFF4275 at 195.452 kb on - strand, within GFF4275 at 195.452 kb on - strand, within GFF4275 at 195.481 kb on + strand, within GFF4275 at 195.482 kb on - strand, within GFF4275 at 195.502 kb on + strand, within GFF4275 at 195.502 kb on + strand, within GFF4275 at 195.871 kb on + strand, within GFF4275 at 195.958 kb on + strand, within GFF4275 at 195.959 kb on - strand, within GFF4275 at 195.959 kb on - strand, within GFF4275 at 195.997 kb on + strand, within GFF4275 at 196.087 kb on + strand, within GFF4275 at 196.183 kb on + strand, within GFF4275 at 196.183 kb on + strand, within GFF4275 at 196.184 kb on - strand, within GFF4275 at 196.184 kb on - strand, within GFF4275 at 196.184 kb on - strand, within GFF4275 at 196.184 kb on - strand, within GFF4275 at 196.340 kb on - strand, within GFF4275 at 196.546 kb on - strand, within GFF4275 at 196.546 kb on - strand, within GFF4275 at 196.692 kb on + strand at 196.692 kb on + strand at 196.692 kb on + strand at 196.692 kb on + strand at 196.693 kb on - strand at 196.846 kb on + strand at 197.147 kb on + strand, within GFF4277 at 197.148 kb on - strand, within GFF4277 at 197.148 kb on - strand, within GFF4277 at 197.174 kb on + strand, within GFF4277 at 197.175 kb on - strand, within GFF4277 at 197.544 kb on - strand, within GFF4277 at 197.621 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 194,276 + +0.1 194,276 + -0.1 194,276 + -0.2 194,277 - -0.3 194,277 - -0.5 194,277 - -1.9 194,277 - -1.3 194,278 + -0.7 194,445 + GFF4274 0.21 +1.1 194,605 + GFF4274 0.43 -1.5 194,605 + GFF4274 0.43 -2.0 194,606 - GFF4274 0.43 -0.7 194,606 - GFF4274 0.43 -1.5 194,798 + GFF4274 0.70 -0.7 194,852 - GFF4274 0.78 -0.9 194,879 - GFF4274 0.81 -1.5 195,299 - GFF4275 0.14 -1.3 195,448 + GFF4275 0.23 -1.5 195,448 + GFF4275 0.23 -0.9 195,448 + GFF4275 0.23 -0.7 195,449 - GFF4275 0.23 +0.4 195,451 + GFF4275 0.23 +0.3 195,452 - GFF4275 0.23 -1.4 195,452 - GFF4275 0.23 -0.5 195,452 - GFF4275 0.23 +0.3 195,452 - GFF4275 0.23 -0.7 195,481 + GFF4275 0.25 +2.2 195,482 - GFF4275 0.25 -0.4 195,502 + GFF4275 0.26 -1.0 195,502 + GFF4275 0.26 -0.8 195,871 + GFF4275 0.49 -2.3 195,958 + GFF4275 0.54 +0.8 195,959 - GFF4275 0.54 +1.8 195,959 - GFF4275 0.54 -1.1 195,997 + GFF4275 0.56 -1.4 196,087 + GFF4275 0.62 -2.1 196,183 + GFF4275 0.67 -2.9 196,183 + GFF4275 0.67 +1.8 196,184 - GFF4275 0.68 +3.1 196,184 - GFF4275 0.68 -2.5 196,184 - GFF4275 0.68 -2.4 196,184 - GFF4275 0.68 -1.3 196,340 - GFF4275 0.77 -2.1 196,546 - GFF4275 0.89 -0.3 196,546 - GFF4275 0.89 +0.5 196,692 + +0.4 196,692 + +0.6 196,692 + -2.3 196,692 + -2.2 196,693 - +1.4 196,846 + -2.3 197,147 + GFF4277 0.21 +0.9 197,148 - GFF4277 0.21 -1.0 197,148 - GFF4277 0.21 -1.2 197,174 + GFF4277 0.26 -1.4 197,175 - GFF4277 0.26 +0.5 197,544 - GFF4277 0.89 +2.7 197,621 - -1.0
Or see this region's nucleotide sequence